Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq13448 141 3e-29 >seq13448 Length=225520 Score = 141 bits (156), Expect = 3e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||||||| | |||||||||||| || ||||| ||||||| ||| |||||||| | Sbjct 21231 GAAGTCGATGTCGAAGTCGGGCATGGACACCCGCTCCGGGTTCAAGAAGCGCTCGAACAG 21290 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || || | | |||||||||||||||||| || || || || |||||||||| Sbjct 21291 CAGGTTGTACTGCAGCGGGTCCAGGTCGGTGATCAGCAGCGCATAGGCCACCAGCGAGCC 21350 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | ||||| || || || || ||| |||||| || || ||||| |||||| Sbjct 21351 TGCACCCGAGCCTCGGCCCGGCCCCACCGGGCAGCCGTTTTCTTTGGCCCACTTGATGAA 21410 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39320 ||| | ||||| | |||||| ||||| ||||||| | |||| ||| | ||| | Sbjct 21411 GTCCGAGACGATCAAGAAGTAGCCGGGGAAGCCCATCTTGATGATGGTGTTCAGCTCAAA 21470 Query 39321 CTC 39323 ||| Sbjct 21471 CTC 21473 Score = 127 bits (140), Expect = 7e-25 Identities = 241/348 (69%), Gaps = 9/348 (3%) Strand=Plus/Plus Query 37929 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 37988 |||||| | | ||||||||| ||||| ||| || | | ||| | ||||| | || Sbjct 20082 GGCCGCGAAGAACTCGGCCGTAAAGTGCACCTTGAGCCAGCCGGTGTGATAGGCCAGCAG 20141 Query 37989 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38048 ||| ||||||| ||||| |||||||||| |||| || ||||| | | || ||| Sbjct 20142 CGAGTAAGCCGCAGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTC 20201 Query 38049 CCACACCGCC-CGGA--TGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAA 38105 ||||| | ||| |||| | || || | | || ||| ||| ||||| |||| Sbjct 20202 GAACACCTCGTCGGCCTTGGCCTCGTCGATGTTGT-TGGC-CGC-CGCGCCCTTGCGGAA 20258 Query 38106 GTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAG 38165 | | || | || ||||| | |||| | |||||||||||||||||| || || || | Sbjct 20259 GATGGCGCGGTGCTCGGCCATCTCCTCCGCCTTCTTCTTGCCCATGGCCCGGCGCAGCAT 20318 Query 38166 GTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTG 38225 |||||| || ||| |||| ||| |||| | ||| || | || | ||||||||| || Sbjct 20319 GTCGGCGCCGCCCAGGCTGTAGCCGCCCAGCACCTGGGCGGTCTGCATCACCTGCTCTTG 20378 Query 38226 GTAGATGATGAGCCCGAAGGTCGGGTCCAGGA---TCTCGGCCAGCGG 38270 ||||| |||| ||| ||||| | |||| | |||| ||||||| Sbjct 20379 GTAGACCATGATGCCGTAGGTCTCGGCCAGCACCTTCTCCACCAGCGG 20426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159681060876000