Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq1 125 3e-24 >seq1 Length=2207822 Score = 125 bits (138), Expect = 3e-24 Identities = 376/576 (65%), Gaps = 71/576 (12%) Strand=Plus/Plus Query 3970 ACCCAGGCAGCCGCGACCATGCGCATGGGCGGCGGCATCGGCTACGACTTCTCCACCCTG 4029 ||| |||| |||| ||||||||| ||||| ||| |||||||||| || |||| | Sbjct 722291 ACCGAGGCCGCCGAGACCATGCGGCGTGGCGGTGGCGTCGGCTACGATTTTTCCAAGATC 722350 Query 4030 CGCCCCAAGGGCGACCTGATCGTCAAGCTGCAGTCCCGCAGCTCCGGCCCCATCTCCTTC 4089 ||||| |||||| | | ||| | | ||||||| || |||||| || || || Sbjct 722351 CGCCCGCAGGGCGCCTGGGTCGGCTCGACGCAGTCCAGCGCCTCCGGGCCGGTCAGCTAT 722410 Query 4090 ATGGAGATTTTCGACGCGGTCT-----GCCGCTGCACGTCCTCGTCCGGCCACCGCCGTG 4144 ||| | | || ||| || ||| | || || | |||| | |||| ||||||| Sbjct 722411 ATGCGGGTGTTTGAC-CGCTCTTGTGAGACGGTGGA-GTCCGC---CGGCGCGCGCCGTG 722465 Query 4145 GCGCCCAGATGGGCGTCATGCGCATCGACCACCCCGACATCTTCGAGTTCATCCACGCCA 4204 |||| || ||||| || |||| |||||| ||||||||| | ||||||||||||| Sbjct 722466 GCGCGCAAATGGGGGTGCTGCGTTGCGACCATCCCGACATCGAGGCCTTCATCCACGCCA 722525 Query 4205 AGCAGAAC-GAGCACTTCCTGCGCGGCTTCAATATCTCCATCGCCGTCACCGACGAGTTC 4263 | ||| | | || || ||||| |||||| || || ||| || ||||| | ||| Sbjct 722526 A--AGACCAGGGCGATT--TGCGCAACTTCAACATTTCGGTCGGGGTGACCGATGCCTTC 722581 Query 4264 ATGGA----GTGCAAGC------------GGGACGG-----CAA-GCCGTTCC------- 4294 ||| | ||||| || || || | ||| || | || Sbjct 722582 ATGAAGGCCGTGCAGGCCGCTGCGGATGTGGAACTGGTGCACAAGGCTGAGCCCGGGGAG 722641 Query 4295 -AGCTGAAGTGGGGCGGGCGCGTCT----ACCGCGA---------GGTCGACCCCAA--- 4337 ||| ||| | |||||| || || | |||| |||| | | ||| Sbjct 722642 AAGCAAAAG-GCGGCGGGGGCCACTCAGCGCAGCGATGGGATGTGGGTCTATCGCAAGCT 722700 Query 4338 -------CGAG--CTGTGGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGG 4388 || | ||||||||| ||||||||||||||| ||| |||||||| || Sbjct 722701 GCCCGCCCGGGCGCTGTGGGACCAGATCATGCGCTCCACCTACGACCATGCCGAGCCCGG 722760 Query 4389 CGTCCTGTTCATCGACACCATCAACCGCATGAACAATCTCTGGTACTGCGAGGAGATTGC 4448 ||| |||||| | ||| |||||||| ||||| ||| | |||||||| || ||| | Sbjct 722761 CGTGCTGTTCTTGGACCGCATCAACCAAGACAACAACCTCAGCTACTGCGAAGACATTTC 722820 Query 4449 GGCCACCAACCCGTGCGGCGAGCAGCCGCTGCCTCC 4484 ||||||||||| || | ||||||||||||||||| Sbjct 722821 TGCCACCAACCCTTGTGCGGAGCAGCCGCTGCCTCC 722856 Score = 125 bits (138), Expect = 3e-24 Identities = 376/576 (65%), Gaps = 71/576 (12%) Strand=Plus/Plus Query 3970 ACCCAGGCAGCCGCGACCATGCGCATGGGCGGCGGCATCGGCTACGACTTCTCCACCCTG 4029 ||| |||| |||| ||||||||| ||||| ||| |||||||||| || |||| | Sbjct 724826 ACCGAGGCCGCCGAGACCATGCGGCGTGGCGGTGGCGTCGGCTACGATTTTTCCAAGATC 724885 Query 4030 CGCCCCAAGGGCGACCTGATCGTCAAGCTGCAGTCCCGCAGCTCCGGCCCCATCTCCTTC 4089 ||||| |||||| | | ||| | | ||||||| || |||||| || || || Sbjct 724886 CGCCCGCAGGGCGCCTGGGTCGGCTCGACGCAGTCCAGCGCCTCCGGGCCGGTCAGCTAT 724945 Query 4090 ATGGAGATTTTCGACGCGGTCT-----GCCGCTGCACGTCCTCGTCCGGCCACCGCCGTG 4144 ||| | | || ||| || ||| | || || | |||| | |||| ||||||| Sbjct 724946 ATGCGGGTGTTTGAC-CGCTCTTGTGAGACGGTGGA-GTCCGC---CGGCGCGCGCCGTG 725000 Query 4145 GCGCCCAGATGGGCGTCATGCGCATCGACCACCCCGACATCTTCGAGTTCATCCACGCCA 4204 |||| || ||||| || |||| |||||| ||||||||| | ||||||||||||| Sbjct 725001 GCGCGCAAATGGGGGTGCTGCGTTGCGACCATCCCGACATCGAGGCCTTCATCCACGCCA 725060 Query 4205 AGCAGAAC-GAGCACTTCCTGCGCGGCTTCAATATCTCCATCGCCGTCACCGACGAGTTC 4263 | ||| | | || || ||||| |||||| || || ||| || ||||| | ||| Sbjct 725061 A--AGACCAGGGCGATT--TGCGCAACTTCAACATTTCGGTCGGGGTGACCGATGCCTTC 725116 Query 4264 ATGGA----GTGCAAGC------------GGGACGG-----CAA-GCCGTTCC------- 4294 ||| | ||||| || || || | ||| || | || Sbjct 725117 ATGAAGGCCGTGCAGGCCGCTGCGGATGTGGAACTGGTGCACAAGGCTGAGCCCGGGGAG 725176 Query 4295 -AGCTGAAGTGGGGCGGGCGCGTCT----ACCGCGA---------GGTCGACCCCAA--- 4337 ||| ||| | |||||| || || | |||| |||| | | ||| Sbjct 725177 AAGCAAAAG-GCGGCGGGGGCCACTCAGCGCAGCGATGGGATGTGGGTCTATCGCAAGCT 725235 Query 4338 -------CGAG--CTGTGGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGG 4388 || | ||||||||| ||||||||||||||| ||| |||||||| || Sbjct 725236 GCCCGCCCGGGCGCTGTGGGACCAGATCATGCGCTCCACCTACGACCATGCCGAGCCCGG 725295 Query 4389 CGTCCTGTTCATCGACACCATCAACCGCATGAACAATCTCTGGTACTGCGAGGAGATTGC 4448 ||| |||||| | ||| |||||||| ||||| ||| | |||||||| || ||| | Sbjct 725296 CGTGCTGTTCTTGGACCGCATCAACCAAGACAACAACCTCAGCTACTGCGAAGACATTTC 725355 Query 4449 GGCCACCAACCCGTGCGGCGAGCAGCCGCTGCCTCC 4484 ||||||||||| || | ||||||||||||||||| Sbjct 725356 TGCCACCAACCCTTGTGCGGAGCAGCCGCTGCCTCC 725391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176186332120000