Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq2224 87.8 7e-13 >seq2224 Length=1872321 Score = 87.8 bits (96), Expect = 7e-13 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 53495 TGACCCGCAAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCA 53554 ||||||||||||| ||| | ||| || ||||| | || ||| | || || ||||||| Sbjct 869327 TGACCCGCAAGGGCGCGGTGAGCGCTAAGAAGGGCGAGCTGGGCATCATCCCGGGCAGCA 869268 Query 53555 TGGGCACCCGCTCGTATGTCGTCACCGGCAAGGGCAATCCCG-AGGCGTTGTGCTCGGCG 53613 ||||| | ||| || |||| |||| |||||| || | | || ||| | | || Sbjct 869267 TGGGCGCGCGCAGCTACATCGTGCGCGGCCTGGGCAACCCGGAAAGCTTTGAGAGCTGCA 869208 Query 53614 CCGCACGGTGCGGGCCGCCGGTTCTCCCGCAACAAGGCCCGCAAGATGTTCACCGTCGAG 53673 | ||||| ||||||||| | | ||||| ||||||| |||||||||||||| || Sbjct 869207 GC-CACGGCGCGGGCCGCGTGATGAGCCGCACCAAGGCCAAGAAGATGTTCACCGTGGAC 869149 Query 53674 GA 53675 || Sbjct 869148 GA 869147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188804434424000