Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq1 125 3e-24 >seq1 Length=2207822 Score = 125 bits (138), Expect = 3e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 33072 CGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGACTGGGCGGAGCCTGGGGT 33131 ||||||||||||||||||| |||||||||| |||| ||| || ||||| || || Sbjct 722704 CGCCCGGGCGCTGTGGGACCAGATCATGCGCTCCACCTACGACCATGCCGAGCCCGGCGT 722763 Query 33132 GCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGC 33191 ||||||| | ||| ||||||| ||||||||| | |||||||| ||| | || Sbjct 722764 GCTGTTCTTGGACCGCATCAACCAAGACAACAACCTCAGCTACTGCGAAGACATTTCTGC 722823 Query 33192 CACCAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTT 33251 ||||||||| || | ||||| ||||| || ||||| ||| ||||| ||||||| | Sbjct 722824 CACCAACCCTTGTGCGGAGCAGCCGCTGCCTCCCTATGGTTGCTGCTGCCTGGGCTCGAT 722883 Query 33252 CAACTTG 33258 | ||||| Sbjct 722884 CGACTTG 722890 Score = 125 bits (138), Expect = 3e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 33072 CGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGACTGGGCGGAGCCTGGGGT 33131 ||||||||||||||||||| |||||||||| |||| ||| || ||||| || || Sbjct 725239 CGCCCGGGCGCTGTGGGACCAGATCATGCGCTCCACCTACGACCATGCCGAGCCCGGCGT 725298 Query 33132 GCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGC 33191 ||||||| | ||| ||||||| ||||||||| | |||||||| ||| | || Sbjct 725299 GCTGTTCTTGGACCGCATCAACCAAGACAACAACCTCAGCTACTGCGAAGACATTTCTGC 725358 Query 33192 CACCAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTT 33251 ||||||||| || | ||||| ||||| || ||||| ||| ||||| ||||||| | Sbjct 725359 CACCAACCCTTGTGCGGAGCAGCCGCTGCCTCCCTATGGTTGCTGCTGCCTGGGCTCGAT 725418 Query 33252 CAACTTG 33258 | ||||| Sbjct 725419 CGACTTG 725425 Score = 86.0 bits (94), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 32626 GAAGCCGCAGCCACGATGCGGATGGGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGT 32685 || ||||| | || |||||| ||||| || ||||||| || || || |||| Sbjct 722294 GAGGCCGCCGAGACCATGCGGCGTGGCGGTGGCGTCGGCTACGATTTTTCCAAGATCCGC 722353 Query 32686 CCTCGCGGCGACCTGATCCGCAAGCTCCAGTCCCACTCCTCCGGCCCCATCAGCTTCATG 32745 || | |||| | | || || | |||||| | ||||||| || |||||| ||| Sbjct 722354 CCGCAGGGCGCCTGGGTCGGCTCGACGCAGTCCAGCGCCTCCGGGCCGGTCAGCTATATG 722413 Query 32746 CACATCTTCGACGCGATCT-GCAAGTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCA 32804 | | || ||| || ||| | || || | ||| ||||| ||||| || || || Sbjct 722414 CGGGTGTTTGAC-CGCTCTTGTGAGACGGTGGAGTCCGCCGGCGCGCGCCGTGGCGCGCA 722472 Query 32805 GATGGGGGTGATGCGCGTGGACCATCCCGACATCGAGGAGTTCATTCACGCCAA 32858 ||||||||| |||| ||||||||||||||||||| ||||| |||||||| Sbjct 722473 AATGGGGGTGCTGCGTTGCGACCATCCCGACATCGAGGCCTTCATCCACGCCAA 722526 Score = 86.0 bits (94), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 32626 GAAGCCGCAGCCACGATGCGGATGGGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGT 32685 || ||||| | || |||||| ||||| || ||||||| || || || |||| Sbjct 724829 GAGGCCGCCGAGACCATGCGGCGTGGCGGTGGCGTCGGCTACGATTTTTCCAAGATCCGC 724888 Query 32686 CCTCGCGGCGACCTGATCCGCAAGCTCCAGTCCCACTCCTCCGGCCCCATCAGCTTCATG 32745 || | |||| | | || || | |||||| | ||||||| || |||||| ||| Sbjct 724889 CCGCAGGGCGCCTGGGTCGGCTCGACGCAGTCCAGCGCCTCCGGGCCGGTCAGCTATATG 724948 Query 32746 CACATCTTCGACGCGATCT-GCAAGTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCA 32804 | | || ||| || ||| | || || | ||| ||||| ||||| || || || Sbjct 724949 CGGGTGTTTGAC-CGCTCTTGTGAGACGGTGGAGTCCGCCGGCGCGCGCCGTGGCGCGCA 725007 Query 32805 GATGGGGGTGATGCGCGTGGACCATCCCGACATCGAGGAGTTCATTCACGCCAA 32858 ||||||||| |||| ||||||||||||||||||| ||||| |||||||| Sbjct 725008 AATGGGGGTGCTGCGTTGCGACCATCCCGACATCGAGGCCTTCATCCACGCCAA 725061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198810776316000