Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq2224 132 2e-26 >seq2224 Length=1872321 Score = 132 bits (146), Expect = 2e-26 Identities = 240/347 (69%), Gaps = 13/347 (4%) Strand=Plus/Minus Query 66135 CACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC 66194 || ||||| || ||| ||||| |||||||||| || | ||||||| | ||||| Sbjct 660940 CAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTGACGGCCACCATCAAAAAGTCCAAC 660881 Query 66195 ACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCA--ACGTGGGCTACGGCC 66252 || ||| |||||||| | ||| ||||||||| | || | || ||| Sbjct 660880 TGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTTGGTA--GCC 660823 Query 66253 CGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATG 66312 | || |||||||| |||||||| || ||| |||||||||||| || ||| |||| Sbjct 660822 CT---GAAACCACCACCGGCGGCAATGCCCTGAAGTTCTACGCCTCGGTGCGCCTGGACA 660766 Query 66313 TCCGTCGCATCG---CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGG 66369 |||||||||| | ||| | | |||| |||| ||| || |||| | ||||| | Sbjct 660765 TCCGTCGCATTGGTTCCATCAAAAAGG---GCGAAGAGATCGTGGGCAGCGAAACCCGCG 660709 Query 66370 TGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGT 66429 | |||||||||||||||||| | ||||| || | | ||||||||| | || ||| Sbjct 660708 TCAAGGTCGTCAAGAACAAGGTAGCCCCCCCCTTCAAGGAGGCCGAGTTCGACATCCTGT 660649 Query 66430 ACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTG 66476 | || ||||| | || |||| ||| || ||||||||| |||| Sbjct 660648 ATGGCGAGGGTGTGAGCCGCGAGGGCGAGATCATCGACCTGGGCGTG 660602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242369218586000