Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq16236 118 1e-21 seq9774 104 2e-17 >seq16236 Length=166078 Score = 118 bits (130), Expect = 1e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34550 GCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAA 34609 || |||||||| || ||||| ||||| || || || ||||| | | || || Sbjct 14768 GCTTGGAACCCAGCTGACATCCCTGAAATGGCACTGCCTCCCTGCCATTGCTTGTGTCAG 14827 Query 34610 TTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGG 34669 || ||||| || ||||| |||||||| || ||||| || || ||||| | |||||||| Sbjct 14828 TTTTACGTTGCCAATGGCGAGCTGTCTTGTCAGCTGTACCAGCGATCTGCTGACATGGGC 14887 Query 34670 TTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 | || ||||| || ||||| || || || ||||||||||| | |||||||||||| ||| Sbjct 14888 CTCGGTGTGCCATTTAACATCGCCAGCTATGCTCTGCTCACCTGCATGATCGCTCAGGTC 14947 Score = 118 bits (130), Expect = 1e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| |||||||||||| | ||||||||||| || || || ||||| || ||||| || | Sbjct 14947 GACCTGAGCGATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATGGCACACCGAG 14888 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||| | ||||| || || ||||| || |||||||| ||||| || ||||| || Sbjct 14887 GCCCATGTCAGCAGATCGCTGGTACAGCTGACAAGACAGCTCGCCATTGGCAACGTAAAA 14828 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || || | | ||||| || || || ||||| ||||| || |||||||| || Sbjct 14827 CTGACACAAGCAATGGCAGGGAGGCAGTGCCATTTCAGGGATGTCAGCTGGGTTCCAAGC 14768 >seq9774 Length=82367 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| ||||| |||||| | ||||||||||| || || || ||||| || ||||| || | Sbjct 80911 GACCTGAGCAATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATGGCACGCCGAG 80970 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 | |||||| | ||||| || || ||||| || |||| ||| ||||| || ||||| || Sbjct 80971 GCTCATGTCAGCAGATCGCTGGTACAGCTGACAAGACAACTCGCCATTGGCAACGTAAAA 81030 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || || | | ||||| || || || ||||| ||||| || |||||||| || Sbjct 81031 CTGACACAAGCAATGGCAGGGAGGCAGTGCCATTTCAGGGATGTCAGCTGGGTTCCAAGC 81090 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34550 GCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAA 34609 || |||||||| || ||||| ||||| || || || ||||| | | || || Sbjct 81090 GCTTGGAACCCAGCTGACATCCCTGAAATGGCACTGCCTCCCTGCCATTGCTTGTGTCAG 81031 Query 34610 TTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGG 34669 || ||||| || ||||| ||| |||| || ||||| || || ||||| | |||||| | Sbjct 81030 TTTTACGTTGCCAATGGCGAGTTGTCTTGTCAGCTGTACCAGCGATCTGCTGACATGAGC 80971 Query 34670 TTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 | || ||||| || ||||| || || || ||||||||||| | |||||| ||||| ||| Sbjct 80970 CTCGGCGTGCCATTTAACATCGCCAGCTATGCTCTGCTCACCTGCATGATTGCTCAGGTC 80911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448161540960000