Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10870 158 3e-33 seq9661 152 1e-31 seq15668 114 3e-20 >seq10870 Length=359794 Score = 158 bits (174), Expect = 3e-33 Identities = 132/162 (81%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| ||||||||||| ||||| || ||||||||||| | ||||||||||| |||| || Sbjct 75545 CCTGCCATCTTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCAGGGGGAATACC 75486 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| || ||| ||| || ||||| || |||||||| || ||||| || Sbjct 75485 TTCCTTGTCCTGAATTTTTGCTTTGACATTTTCAATTGTGTCAGAAGCCTCCACCTCAAG 75426 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| |||||||||||||| ||||| | |||||| Sbjct 75425 GGTGATGGTCTTCCCCGTGAGAGTCTTCACAAAGATCTGCAT 75384 >seq9661 Length=48700 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| ||||||||||| || || | |||||| | ||||| Sbjct 31606 AGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCC 31665 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||||||||| || |||||||| || |||||||| ||||| | |||||||| || Sbjct 31666 TCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCT 31725 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||| || ||| || ||||| | ||||| ||| Sbjct 31726 TGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACCTCCAAGGTGATAGTC 31785 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 31786 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| ||||||||||| || || | |||||| | || || Sbjct 31834 AGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCC 31893 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| || || |||||||| ||||| | |||||||| || Sbjct 31894 TCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCT 31953 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| |||||||| |||||| || ||||| | || || ||| Sbjct 31954 TGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAGGTAATGGTC 32013 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| || || | ||||||| Sbjct 32014 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 32046 >seq15668 Length=647317 Score = 114 bits (126), Expect = 3e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| ||||||||||| || ||||| | | |||||||||||||||| || || Sbjct 380325 CCATCTTCAAGCTGCTTGCCAGCAAAGATTAATCTCTGTTGGTCAGGAGGAATGCCCTCT 380266 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || || || ||| || ||||| || | |||||| |||||| || | || Sbjct 380265 TTGTCTTGAATTTTAGATTTAACATTTTCAATTGAGTCAGAAGCTTCAACTTCCAACGTA 380206 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || |||||||| || ||||| | |||||| || Sbjct 380205 ATTGTCTTCCCAGTGAGAGTTTTCACAAAGATCTGCATCTT 380165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158884670570000