Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9661 93.3 4e-14 >seq9661 Length=48700 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| || || || |||| ||| ||||| | || || Sbjct 31609 ACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCT 31668 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | ||| ||||| ||||| ||||||||||| ||||||| || | || || || || | Sbjct 31669 AACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGG 31728 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||| || | || | | ||||| | |||||| |||| |||||| | || Sbjct 31729 ATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACCTCCAAGGTGATAGTCTTG 31788 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 31789 CCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429451368434000