Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq9360 89.7 3e-13 seq10870 86.0 4e-12 >seq9360 Length=410125 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || |||||||| || || || || | Sbjct 230590 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCC 230649 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || |||||| || || ||||| | || || |||||| Sbjct 230650 GATACCATCGAGAACGTGAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCCGATCAA 230709 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || ||||||| | ||||| | ||| |||||| Sbjct 230710 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAAC 230769 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 230770 ATCCAGAAGGAGTCTAC 230786 >seq10870 Length=359794 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || |||||||| || || ||||| || || || || | | Sbjct 75384 ATGCAGATCTTTGTGAAGACTCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCTTCT 75443 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| ||||||| ||||| |||||| | || || || ||| Sbjct 75444 GACACAATTGAAAATGTCAAAGCAAAAATTCAGGACAAGGAAGGTATTCCCCCTGACCAA 75503 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 ||| | | || || || || || ||||||||||| Sbjct 75504 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGA 75538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337935449144000