Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9661 167 6e-36 seq10870 123 6e-23 seq1 102 2e-16 seq10921 91.5 4e-13 seq11737 87.8 4e-12 seq1447 87.8 4e-12 >seq9661 Length=48700 Score = 167 bits (184), Expect = 6e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | |||||| || || || ||||||| ||||| |||| | || Sbjct 31596 ACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGT 31655 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| |||| |||||| ||||| |||||||| || ||||||||||| || || || Sbjct 31656 TCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCC 31715 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| ||||||| |||||||| || |||| ||||| || || Sbjct 31716 TTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACCTCCAA 31775 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| || || | ||| | ||||| Sbjct 31776 GGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | |||||| || || || ||||||| ||||| |||| | || Sbjct 31824 ACGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGT 31883 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || | |||||| ||||| ||||| || || ||||||||||| || || || Sbjct 31884 TCGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCC 31943 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| ||||| |||||| |||||||| || |||| ||||| || || Sbjct 31944 TTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAA 32003 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||||||| |||| || || | ||| | |||||| Sbjct 32004 GGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 32046 >seq10870 Length=359794 Score = 123 bits (136), Expect = 6e-23 Identities = 117/147 (80%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| || ||||| |||||||||||||||| |||||||| || ||||||||| Sbjct 75544 CTGCCATCTTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCAGGGGGAATACCT 75485 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || || |||||| || ||| ||| || ||||| || | ||||| || | Sbjct 75484 TCCTTGTCCTGAAT-TTTTGCTTTGACATTTTCAATTGTGTCAGAAGCCTCCACCTCAAG 75426 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| ||||| | ||| || Sbjct 75425 GGTGATGGTCTTCCCCGTGAGAGTCTT 75399 >seq1 Length=2207822 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||||| |||||| || || ||||| ||| ||||||||||||| ||||||||| Sbjct 515584 ATGTCAAGGGTAGGTAAGGTTTTTCGCGTTGCATCGAATTAAACCACATCATCCACCGCT 515525 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | |||||| || |||||||||| |||||||||| |||| | | |||| || Sbjct 515524 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGCCGTACTCCCCAGGCGGT 515465 Query 7844 AATATTTACGCGTTAGCT 7861 | || ||||||||||| Sbjct 515464 CAACTTCACGCGTTAGCT 515447 Score = 89.7 bits (98), Expect = 1e-12 Identities = 95/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 7739 TAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTCCG 7798 |||| || || ||||| ||| ||||||||||||| |||||||||| | | ||| Sbjct 521155 TAAGGTTTTTCGCGTTGCATCGAATTAAACCACATCATCCACCGCTTGTGCGGGTCCCCG 521096 Query 7799 TCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG-AATATTTACGCGTT 7857 ||| || |||||||||| |||||||||| |||| | | |||| || | || ||||||| Sbjct 521095 TCAATTCCTTTGAGTTTCAACCTTGCGGCCGTACTCCCCAGGCGGTCAACTTCACGCGTT 521036 Query 7858 AGCT 7861 |||| Sbjct 521035 AGCT 521032 >seq10921 Length=25804 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 7727 TTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTA 7786 |||||| | |||||| ||| | |||| ||| ||||||||||||| ||||||||||| Sbjct 1309 TTCTAGCCTAGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTG 1250 Query 7787 TACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT 7846 | | | |||||| || |||||||||| | | |||| | |||| | | |||||||| | Sbjct 1249 TGCGGACCCCCGTCAATTCCTTTGAGTTTCACCGTTGCCGGCGTACTCCCCAGGTGGATT 1190 Query 7847 ATTTA 7851 | ||| Sbjct 1189 ACTTA 1185 >seq11737 Length=277544 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||| | |||| ||| ||||||||||||| |||||||||| | | | Sbjct 220429 TTGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGATCCACCGCTTGTGCGGGCC 220488 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CG 7853 |||||| || |||||||||| | |||||| |||| | | ||||||| ||| ||| | Sbjct 220489 CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGTGGTATACTTATCA 220548 Query 7854 CGTTAGCTTA 7863 | || ||||| Sbjct 220549 CTTTCGCTTA 220558 >seq1447 Length=1029730 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||| | |||| ||| ||||||||||||| |||||||||| | | | Sbjct 755944 TTGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGATCCACCGCTTGTGCGGGCC 755885 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CG 7853 |||||| || |||||||||| | |||||| |||| | | ||||||| ||| ||| | Sbjct 755884 CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGTGGTATACTTATCA 755825 Query 7854 CGTTAGCTTA 7863 | || ||||| Sbjct 755824 CTTTCGCTTA 755815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192256172492000