Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq16548 96.9 1e-15 >seq16548 Length=1313 Score = 96.9 bits (106), Expect = 1e-15 Identities = 171/246 (70%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 53720 CAGATCGGATCGACTCCGTGTTCATCGCGGTGAGCCGCGACGAACTCCACGATCAGCGCT 53779 |||||||| || || ||||| | ||||| || || ||| |||| || ||| || Sbjct 421 CAGATCGGCTCAACGCCGTGGACCTCGCGATGGGCGTCGATGAACGCCTTCATCGCCGAA 362 Query 53780 GTGGGCGGTCGATCTCCGCC---GCAAAGAAAGCCGAAGCCTGCTTCAAGATCGTGTTCG 53836 |||||||||| ||||||| ||||| || || || |||| | ||||||| ||| | Sbjct 361 ACGGGCGGTCGAGCTCCGCCTGCGCAAAAAACGCGGACGCCTTCCGCAAGATCTCGTTGG 302 Query 53837 CTCGCCGCAGTTCACGGTTCTCCCGCTCCAACGCCGCGATGCGGTCAGCGTCCTCACTCG 53896 | |||| || || || || ||||||||| | ||| || || | ||| |||| Sbjct 301 CCTGCCGGAGCTCGCGAACTTCGCGCTCCAACTGCTTGATCCGCTCGGT---CTCGCTCG 245 Query 53897 TGGT--GCCCGGG-CGGACCCCGCCGTCGATCTCGGCCTGACGAACCCAATTGCGCAACG 53953 | || ||||||| || || ||| | || |||||||||||| | ||| | |||| || Sbjct 244 TTGTCGGCCCGGGGCGAACACCGGCATCTCGCTCGGCCTGACGCAGCCACTGTCGCAGCG 185 Query 53954 CCTCGG 53959 ||||| Sbjct 184 TCTCGG 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175808812832000