Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq2224 118 2e-21 seq11737 89.7 7e-13 >seq2224 Length=1872321 Score = 118 bits (130), Expect = 2e-21 Identities = 214/311 (69%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 99860 TGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCGTCA 99919 || ||||| || || |||||||||||| | || || || ||||| || || ||||| Sbjct 1212252 TGCCAGCTCTACCAGCGCAGCGCCGATATCTTTTTGGGCGTGCCCTTCAACATTGCCAGC 1212193 Query 99920 TACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAACATGACCGTGGGTGATTTCGTC 99979 ||||| ||| ||| ||||||| | || |||||| || || ||||||||||||| || Sbjct 1212192 TACGCGTTGCTGACCCACATGCTGGCCCAGCAGTGCGACTTGGACGTGGGTGATTTCATC 1212133 Query 99980 TGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAAACCCGTACCCAGTTA 100039 ||| | || || ||| || || |||| || || | || ||| | || ||| || Sbjct 1212132 TGGACGGGCGGCGACTGCCACCTCTACACCAATCACTTCGAGCAAGTGCAAACGCAGCTA 1212073 Query 100040 GGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACTCCATCTTC 100099 | || | || | | | || ||||| ||||| || ||||| | ||||||||| Sbjct 1212072 GCGCGCACGCCCTTTGCCTACCCGGTGCTGAACATCAAGCGCAAGCCCGCGTCCATCTTC 1212013 Query 100100 GAATATAAGTTTGAAGACTTCGAACT--TGAAGGCTACGACCCGCATCCTGCAATCAAAG 100157 || || |||| |||||||| || | || || ||| | | ||| | | ||||| | Sbjct 1212012 GACTACGAGTTCGAAGACTTTGAGGTGCTGGAG--TACCAGCACCATGCGCCCATCAAGG 1211955 Query 100158 CACCGGTCGCG 100168 ||||||| ||| Sbjct 1211954 CACCGGTGGCG 1211944 >seq11737 Length=277544 Score = 89.7 bits (98), Expect = 7e-13 Identities = 169/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 99202 AGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCA 99261 |||||| || || || ||||| |||||| || || || ||||| || |||| Sbjct 158164 AGACCGAACAGGCGTGGGAACCCTCAGTATTTTTGGACATCAAATGCGCTTTGATCTCTC 158223 Query 99262 AGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGAACT 99321 ||||||||| ||||| || || || || || || | | ||||||||| ||||| Sbjct 158224 AGAAGGCTTCCCGCTTGTTACCACCAAAAAATGCCATTTAAGATCGATTATTGTAGAACT 158283 Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381 ||||||| | || || || |||||| || ||| | || || || || | || Sbjct 158284 TTTGTGGTTTTTAAAGGGTGAAACCAATATCGCTTATCTCAAAGAAAACAAGGTGAGCAT 158343 Query 99382 TTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441 ||||||||||||| | | || |||| || || || || || |||||| |||||| | Sbjct 158344 TTGGGACGAATGGGCGGATGAAAATGGGGATCTGGGTCCAGTTTACGGTGCCCAGTGGAG 158403 Query 99442 GTCTTGGCC 99450 |||||| Sbjct 158404 AAGTTGGCC 158412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716302795600000