Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq16548 96.9 2e-15 >seq16548 Length=1313 Score = 96.9 bits (106), Expect = 2e-15 Identities = 171/246 (70%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 6634 CCGAGGCGTTGCGCAATTGGGTTCGTCAGGCCGAGATCGACGGCGGGGTCCG-CCCGGGC 6692 ||||| || |||| | ||| | |||||||||||| || | ||| || || ||||||| Sbjct 179 CCGAGACGCTGCGACAGTGGCTGCGTCAGGCCGAGCGAGATGCCGGTGTTCGCCCCGGGC 238 Query 6693 --ACCACGAGTGAGGACGCTGACCGCATCGCGGCGTTGGAGCGGGAGAACCGTGAACTGC 6750 || ||||| ||| | || || ||| | ||||||||| || || || || | Sbjct 239 CGACAACGAGCGAG---ACCGAGCGGATCAAGCAGTTGGAGCGCGAAGTTCGCGAGCTCC 295 Query 6751 GGCGAGCGAACACGATCTTGAAGCAGGCTTCGGCTTTCTTTGC---GGCGGAGATCGACC 6807 ||| || ||| ||||||| | |||| || || || ||||| ||||||| |||||| Sbjct 296 GGCAGGCCAACGAGATCTTGCGGAAGGCGTCCGCGTTTTTTGCGCAGGCGGAGCTCGACC 355 Query 6808 GCCCACAGCGCTGATCGTGGAGTTCGTCGCGGCTCACCGCGATGAACACGGAGTCGATCC 6867 |||| || ||| || |||| ||| || || ||||| | ||||| || || || Sbjct 356 GCCCGTTTCGGCGATGAAGGCGTTCATCGACGCCCATCGCGAGGTCCACGGCGTTGAGCC 415 Query 6868 GATCTG 6873 |||||| Sbjct 416 GATCTG 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299604659806000