Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq2224 138 7e-28 >seq2224 Length=1872321 Score = 138 bits (152), Expect = 7e-28 Identities = 221/315 (70%), Gaps = 17/315 (5%) Strand=Plus/Minus Query 1268 CAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTAC 1327 ||| |||||||||||||||| || || || | || ||||| ||||| || ||| ||| Sbjct 1212249 CAGCTCTACCAGCGCAGCGCCGATATCTTTTTGGGCGTGCCCTTCAACATTGCCAGCTAC 1212190 Query 1328 GCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGATCTGG 1387 ||| | || | |||||| | || |||||| || | || |||||||| | |||||| Sbjct 1212189 GCGTTGCTGACCCACATGCTGGCCCAGCAGTGCGACTTGGACGTGGGTGATTTCATCTGG 1212130 Query 1388 ACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCGCTGATGCAGCT-CCG 1446 || ||||||||||||||| |||||| ||| ||| |||| || | || | |||||| || Sbjct 1212129 ACGGGCGGCGACTGCCACCTCTACACCAATCACTTCGAGCAAGTGCAAACGCAGCTAGCG 1212070 Query 1447 CCGACGACCGCGGCCCTACCCGAGGCTCGTGCT--ACACCACGCGC-------CGTCGAT 1497 | ||| || | |||||||| ||||| ||| || |||| |||| || Sbjct 1212069 CGCACGCCCTTTG-CCTACCCG------GTGCTGAACATCAAGCGCAAGCCCGCGTCCAT 1212017 Query 1498 CTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCGTCGATCAA 1557 |||||||||| || ||| || | | | || | ||| | | || || | ||||| Sbjct 1212016 CTTCGACTACGAGTTCGAAGACTTTGAGGTGCTGGAGTACCAGCACCATGCGCCCATCAA 1211957 Query 1558 GGCGCCGGTGGCCGT 1572 ||| |||||||| || Sbjct 1211956 GGCACCGGTGGCGGT 1211942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296066236218000