Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq13448 165 3e-36 seq926 98.7 3e-16 >seq13448 Length=225520 Score = 165 bits (182), Expect = 3e-36 Identities = 244/339 (72%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 40083 CCGAAGGTCCCGATCTGTGCGAC--CTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGA 40140 |||||||| ||||||| || |||| | ||| |||||| || | ||||| | Sbjct 21148 CCGAAGGTGGCGATCTGGCTCACGGCTTGGCGGCC--GTACTTGTCTTTAACGTAATCAA 21205 Query 40141 TCACGTCGCCCCG--TCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCG 40198 | ||| | | || | ||| | || |||||||||||| | ||||||||||||||| || Sbjct 21206 TGACGCGGTCGCGATTGGCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGACACCCG 21263 Query 40199 CTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT 40258 ||| ||||||| ||| |||||||| | || || | | | ||||||||||| ||||| Sbjct 21264 CTCCGGGTTCAAGAAGCGCTCGAACAGCAGGTTGTACTGCAGCGGGTCCAGGTCGGTGAT 21323 Query 40259 GCCGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACA 40317 || ||| ||||| |||||||| || ||| ||||||| || || || || ||| Sbjct 21324 CAGCAGCGCA-TAGGCCACCAGCGAGCCTGCACCCGAGCCTCGGCCCGGCCCCACCGGGC 21382 Query 40318 CGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACC 40377 |||||| || |||||||| ||||||||| | ||||| || ||||||| ||||| | Sbjct 21383 AGCCGTTTTCTTTGGCCCACTTGATGAAGTCCGAGACGATCAAGAAGTAGCCGGGGAAGC 21442 Query 40378 CCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCT 40416 ||| || |||||| ||| | ||| ||| ||| ||| Sbjct 21443 CCATCTTGATGATGGTGTTCAGCTCAAACTCCAGCCGCT 21481 Score = 122 bits (134), Expect = 3e-23 Identities = 223/322 (69%), Gaps = 6/322 (2%) Strand=Plus/Plus Query 39014 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 39073 |||||| | | ||||||||| ||||| ||| || | | ||| | ||||| | || Sbjct 20082 GGCCGCGAAGAACTCGGCCGTAAAGTGCACCTTGAGCCAGCCGGTGTGATAGGCCAGCAG 20141 Query 39074 ACCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 39133 ||| ||||||| ||||| |||||||||| |||| || ||||| | | || ||| Sbjct 20142 CGAGTAAGCCGCAGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTC 20201 Query 39134 CCACACCGCCTGGA---TGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAA 39190 ||||| | | | |||| |||| || | | || ||| ||| ||||| |||| Sbjct 20202 GAACACCTCGTCGGCCTTGGCCTCGTCGATGTTGT-TGGC-CGC-CGCGCCCTTGCGGAA 20258 Query 39191 GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAG 39250 | | || | || ||||| |||| | |||||||||||||||||| ||||| || | Sbjct 20259 GATGGCGCGGTGCTCGGCCATCTCCTCCGCCTTCTTCTTGCCCATGGCCCGGCGCAGCAT 20318 Query 39251 GTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTG 39310 |||||| ||||||||||| || | || | ||| || | || | ||||||||| || Sbjct 20319 GTCGGCGCCGCCCAGGCTGTAGCCGCCCAGCACCTGGGCGGTCTGCATCACCTGCTCTTG 20378 Query 39311 GTAGATGACCAGCCCGTAGGTC 39332 ||||| | | ||||||||| Sbjct 20379 GTAGACCATGATGCCGTAGGTC 20400 >seq926 Length=786 Score = 98.7 bits (108), Expect = 3e-16 Identities = 217/322 (67%), Gaps = 10/322 (3%) Strand=Plus/Minus Query 39015 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGA 39074 || |||||| | || |||||||| |||| ||||| | || || |||| || || || Sbjct 710 GCAGCCATGAATTCAGCCGGGTAATGCGCCTTCAACCAGGCGGTATGGTATGCAATTAGC 651 Query 39075 CCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCC 39134 | || || || ||||||| |||||||| |||| | || || | | | || ||| Sbjct 650 GCATAAGCAGCCGAGTGCGATTTGTTGAAACCGTATTCTGCAAACTTTTCCATCAAGTCG 591 Query 39135 CACACCGCCTGGATGGCACCGTCCGAGTAG---CCTCGCTCGCGCGCTCCCTTCTGGAAG 39191 | | | || |||| || | | || || |||||| || || || ||| Sbjct 590 AAAAGCTGCT---TGGCCACGGCTGGGTCCACACCACGCTCGGTGGCGCCAGTCGTGAAA 534 Query 39192 --TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAA 39249 |||||| || |||||||| |||| |||||||| || |||||||||||||| | | Sbjct 533 ATTTCACG--CTGCTTGGCCATTTCCTCAGGCTTCTTTTTACCCATGGCTCGGCGCAACA 476 Query 39250 GGTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCT 39309 |||| || |||| |||||| || || || ||||| || || | |||||| || | Sbjct 475 GGTCAGCGCCGCCCAAGCTGTAGCCGGCCAGAATCTGGGCAACCAACATCACCTGTTCTT 416 Query 39310 GGTAGATGACCAGCCCGTAGGT 39331 |||| | | || |||||||| Sbjct 415 GGTAAACAATCACACCGTAGGT 394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160106569904000