Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031080.1 Length=160985 Score E Sequences producing significant alignments: (Bits) Value seq13448 89.7 5e-13 seq8969 84.2 2e-11 >seq13448 Length=225520 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 121526 ACCTACGGCATCTTGGTCTACCAGGAACAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 121585 |||||||||||| |||||||||| || ||| |||| | |||||| ||| ||||| ||| Sbjct 20399 ACCTACGGCATCATGGTCTACCAAGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 20340 Query 121586 TTCACTCCGGGCGAGGCCGAGCGTCTGCGCAAGGGCATCGGCAAGAAGAAGATGGAG 121642 | || | ||||| ||||| |||||| || ||| |||||||||||| |||| Sbjct 20339 TACAGCCTGGGCGGCGCCGACATGCTGCGCCGGGCCATGGGCAAGAAGAAGGCGGAG 20283 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 120467 GGGCCGGGCCGTGGATCCGCCGGAGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 120526 ||||||||||| || || | | |||||||||||| |||| | || |||||| Sbjct 21374 GGGCCGGGCCGAGGCTCGGGTGCAGGCTCGCTGGTGGCCTATGCGCTGCTGATCACCGAC 21315 Query 120527 ATCGATCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGATCGCCCCGAC 120586 | || ||| | ||||| ||||| |||||||||||||| | |||||||| || | Sbjct 21314 CTGGACCCGCTGCAGTACAACCTGCTGTTCGAGCGCTTCTTGAACCCGGAGCGGGTGTCC 21255 Query 120587 TTTCCCGACATCGACGTCGACTTC 120610 | |||||| ||||| |||||||| Sbjct 21254 ATGCCCGACTTCGACATCGACTTC 21231 >seq8969 Length=73153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 100844 GCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGTAA 100903 ||||| ||||||||| |||||||||| ||||||||||||| |||||||||| ||| | Sbjct 3834 GCGAAAGTAGCTCAGTTGGTAGAGCGTAACCTTGCCAAGGTTAAGGTCGCGGGTTCGAGA 3893 Query 100904 CCCGTTCTTCGCTC 100917 ||||| ||||||| Sbjct 3894 CCCGTCTTTCGCTC 3907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514908119600000