Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq11737 118 2e-21 seq1 89.7 8e-13 >seq11737 Length=277544 Score = 118 bits (130), Expect = 2e-21 Identities = 178/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 201841 AAAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAA 201900 |||| | ||||| || || ||| |||||| | |||| |||| || ||||||||| | Sbjct 158158 AAAAACAGACCGAACAGGCGTGGGAACCCTCAGTATTTTTGGACATCAAATGCGCTTTGA 158217 Query 201901 CTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCA 201960 | |||||| || ||||| || ||||||||||| || | | || || || Sbjct 158218 TCTCTCAGAAGGCTTCCCGCTTGTTACCACCAAAAAATGCCATTTAAGATCGATTATTGT 158277 Query 201961 TGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGT 202020 || || ||||||| | | |||||| ||||| ||| ||| | ||||| ||||| || Sbjct 158278 AGAACTTTTGTGGTTTTTAAAGGGTGAAACCAATATCGCTTATCTCAAAGAAAACAAGGT 158337 Query 202021 CACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCA 202080 | ||| |||||||||||||||||| |||| || || | || || || |||||| || Sbjct 158338 GAGCATTTGGGACGAATGGGCGGATGAAAATGGGGATCTGGGTCCAGTTTACGGTGCCCA 158397 Query 202081 ATGGCGTAGCTGG 202093 ||| | || ||| Sbjct 158398 GTGGAGAAGTTGG 158410 >seq1 Length=2207822 Score = 89.7 bits (98), Expect = 8e-13 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 596 CCTGAGTGAAGAATTCTG--GGGGAGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACC 653 ||| | ||||||| ||| |||| ||| |||| ||| ||||||||||||||||||||| Sbjct 360009 CCTAATTGAAGAAAGCTGCAGGGGTATAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACC 360068 Query 654 GAATGTTGCAGGTTCGAGTCCTGTCTCCCCTGCCAA 689 ||| |||| |||||||| |||| |||||||||| Sbjct 360069 GAAGGTTGTAGGTTCGATTCCTACTGCCCCTGCCAA 360104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787825899280000