Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq2224 138 2e-27 seq11737 107 3e-18 >seq2224 Length=1872321 Score = 138 bits (152), Expect = 2e-27 Identities = 218/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 200845 TGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCAACATTGCATCA 200904 || ||||| || ||||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 1212252 TGCCAGCTCTACCAGCGCAGCGCCGATATCTTTTTGGGCGTGCCCTTCAACATTGCCAGC 1212193 Query 200905 TACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCGGTGATTTCGTA 200964 ||||| | |||| |||||| | ||||| ||| | | || || ||||||||| | Sbjct 1212192 TACGCGTTGCTGACCCACATGCTGGCCCAGCAGTGCGACTTGGACGTGGGTGATTTCATC 1212133 Query 200965 TGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTCGTCTGCAACTG 201024 |||||||| || ||| ||| |||||| ||||||| ||||| || | ||| || Sbjct 1212132 TGGACGGGCGGCGACTGCCACCTCTACACCAATCACTTCGAGCAAGTGCAAACGCAGCTA 1212073 Query 201025 TCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCCGGACTCTATCTTC 201084 | || || | | | ||| | |||| || || ||||| | || |||||| Sbjct 1212072 GCGCGCACGCCCTTTGCCTACCCGGTGCTGAACATCAAGCGCAAGCCCGCGTCCATCTTC 1212013 Query 201085 GATTACAAGTTCGAAGACTTTGAGCTTACTGG-TTACGAACCGCATCCTGCGATAAAAGC 201143 || ||| ||||||||||||||||| | |||| ||| | | ||| | | || || || Sbjct 1212012 GACTACGAGTTCGAAGACTTTGAG-GTGCTGGAGTACCAGCACCATGCGCCCATCAAGGC 1211954 Query 201144 ACCGGTGGCG 201153 |||||||||| Sbjct 1211953 ACCGGTGGCG 1211944 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/102 (80%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 4080 TGGAGAATTGACCGAGAGGCCGAAAGTGCTCCCCTGCTAAGGGAG--TGGTCCTTAGGGG 4137 |||||| |||||||| ||||||| |||||||||||||||||||| || || | | | Sbjct 1490096 TGGAGACGTGACCGAGTGGCCGAAGGTGCTCCCCTGCTAAGGGAGTATGCGCCAAAAGCG 1490155 Query 4138 C-CCGAAGGTTCGAATCCTTCATTCTCCGCCAA-ACAATGAA 4177 | ||| ||||||||||| || |||||||||| ||||||| Sbjct 1490156 CATCGAGGGTTCGAATCCCTCCGTCTCCGCCAACCCAATGAA 1490197 >seq11737 Length=277544 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 200124 TATTTTCGGTGCACAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAA 200183 |||||| || || |||||||| |||| ||| |||||||| | || || ||||| Sbjct 158191 TATTTTTGGACATCAAATGCGCTTTGATCTCTCAGAAGGCTTCCCGCTTGTTACCACCAA 158250 Query 200184 GAAGTGCCATCTCCGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAA 200243 || |||||| | | || || ||| || || |||||||| | || ||||| ||||| Sbjct 158251 AAAATGCCATTTAAGATCGATTATTGTAGAACTTTTGTGGTTTTTAAAGGGTGAAACCAA 158310 Query 200244 TATCAAGTATCTGAACGATAACAATGTCACCATTTGGGACGAATGGGCG 200292 |||| ||||| || || ||||| || | ||||||||||||||||||| Sbjct 158311 TATCGCTTATCTCAAAGAAAACAAGGTGAGCATTTGGGACGAATGGGCG 158359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783183744000000