Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq11737 147 3e-30 seq2224 100 4e-16 >seq11737 Length=277544 Score = 147 bits (162), Expect = 3e-30 Identities = 183/248 (74%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 196061 CGAGAAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTT 196120 ||| ||| | ||||| || ||| ||| ||| || |||||| || |||| ||||| || Sbjct 158155 CGAAAAAACAGACCGAACAGGCGTGGGAACCCTCAGTATTTTTGGACATCAAATGCGCTT 158214 Query 196121 TGACCTGCGCA-AAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCA 196179 ||| || | || |||| |||||||| || ||||||||||| | || | |||| || | Sbjct 158215 TGATCT-CTCAGAAGGCTTCCCGCTTGTTACCACCAAAAAATGCCATTTAAGATCGATTA 158273 Query 196180 TCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACA 196239 | ||||| |||||||| | || || || ||||| ||| ||||| ||||| |||| Sbjct 158274 TTGTAGAACTTTTGTGGTTTTTAAAGGGTGAAACCAATATCGCTTATCTCAAAGAAAACA 158333 Query 196240 ACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTA 196299 | || || || ||||| || ||||| |||||| |||| ||||| || || || |||||| Sbjct 158334 AGGTGAGCATTTGGGACGAATGGGCGGATGAAAATGGGGATCTGGGTCCAGTTTACGGTG 158393 Query 196300 AGCAGTGG 196307 |||||| Sbjct 158394 CCCAGTGG 158401 >seq2224 Length=1872321 Score = 100 bits (110), Expect = 4e-16 Identities = 207/308 (67%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 196755 TGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCGCTTCG 196814 || ||||| ||||||||||| || || |||| | || || || |||||||| || Sbjct 1212252 TGCCAGCTCTACCAGCGCAGCGCCGATATCTTTTTGGGCGTGCCCTTCAACATTGCCAGC 1212193 Query 196815 TACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGATTTCGTC 196874 ||||| || || |||||| |||| |||||| | | ||| | |||||||||| || Sbjct 1212192 TACGCGTTGCTGACCCACATGCTGGCCCAGCAGTGCGACTTGGACGTGGGTGATTTCATC 1212133 Query 196875 TGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTGCAGCTC 196934 |||||||||||||| ||| || ||| | || || | || || | |||||| Sbjct 1212132 TGGACGGGCGGCGACTGCCACCTCTACACCAATCACTTCGAGCAAGTGCAAACGCAGCTA 1212073 Query 196935 TCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTCCATTTTC 196994 | || || || || ||| ||||| || || || | ||||| ||| Sbjct 1212072 GCGCGCACGCCCTTTGCCTACCCGGTGCTGAACATCAAGCGCAAGCCCGCGTCCATCTTC 1212013 Query 196995 GACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCATTAAGGCA 197054 ||||| |||||||||| ||||| | ||| ||| | ||| | ||||| |||||| Sbjct 1212012 GACTACGAGTTCGAAGACTTTGAGGTGCTGGAGTACCAGCACCATGCGCCCATCAAGGCA 1211953 Query 197055 CCGGTTGC 197062 ||||| || Sbjct 1211952 CCGGTGGC 1211945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770133880880000