Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq11737 123 9e-24 seq2224 95.1 5e-15 >seq11737 Length=277544 Score = 123 bits (136), Expect = 9e-24 Identities = 281/420 (67%), Gaps = 2/420 (0%) Strand=Plus/Plus Query 51918 GTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAG 51977 || |||||||||||||||||||||||||||||||| | |||||||| || || ||| Sbjct 158336 GTGAGCATTTGGGACGAATGGGCGGATGAAAATGGGGATCTGGGTCCAGTTTACGGTGCC 158395 Query 51978 CAGTGGCGTAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTC 52037 |||||| | |||||| || ||| | | || || || ||| | || | | Sbjct 158396 CAGTGGAGAAGTTGGCCAAAGGGAAACGGGGAATTTATTGACCAAATCGAGAAATTAATA 158455 Query 52038 AAATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGT 52097 || || || | | |||||||| | || | | |||||| || ||||||||||||| Sbjct 158456 GAAGACATCAAAAGCAATCCTGATTCTAGAAGACTCATTGTTTCGGCTTGGAATGTGGCG 158515 Query 52098 GATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA 52157 | | ||| | ||||| ||||||| ||||| | || || || ||||| || || Sbjct 158516 CAAATAGATCAAATGGCACTGGCTCCTTGCCACTGCTTGTTTCAGTTTTATGTGGCCGAT 158575 Query 52158 GGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTT 52217 || || | ||| || | || || | ||| || | || ||||||||||| ||| Sbjct 158576 GGAAAATTATCGCTACAGCTCTACCAAAGAAGTGCAGATACCTTTTTGGGCGTTCCCTTT 158635 Query 52218 AACATTGCCAGCTATTCCTTGCTGACGCAT-CTGATTGCTCGAGCAGTTGGCCTTGATGT 52276 |||||||| ||| || | || | || || | |||| || | || ||| | | Sbjct 158636 AACATTGCTTCTTATGCCCTACT-TCTTATGATGGTGGCTCAAGTAACAGGGCTTAAAGC 158694 Query 52277 TGGTGAATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTAGATCAGGT 52336 ||| |||||||| | | |||||| | || || ||||| |||||| | || || || Sbjct 158695 TGGAGAATTCATCCATAGTTTTGGCGATGCACACATTTACAAAAACCATCTTGAGCAAGT 158754 >seq2224 Length=1872321 Score = 95.1 bits (104), Expect = 5e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| | || ||||| ||||| || || |||||||| || || |||||||||||| Sbjct 1212252 TGCCAGCTCTACCAGCGCAGCGCCGATATCTTTTTGGGCGTGCCCTTCAACATTGCCAGC 1212193 Query 52230 TATTCCTTGCTGACGCATCTGATTGCTCGAGCAGTTGGCCTT-GATGTTGGTGAATTCAT 52288 || | |||||||| || || | || | |||||| | ||| || || ||||| ||||| Sbjct 1212192 TACGCGTTGCTGACCCACATGCTGGC-CCAGCAGTGCGACTTGGACGTGGGTGATTTCAT 1212134 Query 52289 TTGGACTGGTGGCGACGTCCATATCTACAACAACCA 52324 ||||| || |||||| ||| |||||| ||| || Sbjct 1212133 CTGGACGGGCGGCGACTGCCACCTCTACACCAATCA 1212098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190055366980000