Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2224 102 1e-16 seq17275 86.0 8e-12 >seq2224 Length=1872321 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 ||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||| Sbjct 1840754 ATTCCTCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 1840813 Query 19807 GCCCAGGTGGAGGAGC 19822 |||||||| ||||||| Sbjct 1840814 GCCCAGGTCGAGGAGC 1840829 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19748 TTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAG 19807 |||| | |||||||||||||||||||| ||||||||||| || |||||||||||||| Sbjct 1840647 TTCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAG 1840706 Query 19808 CCCAGGTGGAGGAGC 19822 ||||||| | ||||| Sbjct 1840707 CCCAGGTCGGGGAGC 1840721 >seq17275 Length=1104 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19748 TTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAG 19807 |||| | ||||||||||||||||||||| ||||||||||| | |||||||||||||| Sbjct 702 TTCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCTCAGGTCCCTGGTTCGAG 643 Query 19808 CCCAGGTGGAGGAGC 19822 |||||| | ||||| Sbjct 642 TCCAGGTCGGGGAGC 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621930434160000