Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq10870 122 2e-22 seq9661 120 7e-22 seq9360 114 3e-20 >seq10870 Length=359794 Score = 122 bits (134), Expect = 2e-22 Identities = 126/163 (77%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || |||||||| || ||||| || ||||||||||| ||||| ||||| | | || | Sbjct 75544 CTGCCATCTTCCAGTTGCTTT--CCAGCGAAGATAAGTCTCTGTTGGTCAGGGGGAATAC 75487 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| || ||||||||| ||||||| | || | |||| ||| ||| || |||| Sbjct 75486 CTTCCTTGTCCTGAATTTTTGCTTTGACATTTTCAATTGTGTCAGAAGCCTCCACCTCAA 75427 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || ||||||||||||||||| |||| |||||| Sbjct 75426 GGGTGATGGTCTTCCCCGTGAGAGTCTTCACAAAGATCTGCAT 75384 >seq9661 Length=48700 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| |||||||||||||| |||| | |||| ||||| |||| Sbjct 31611 CAAG-TGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCTA 31669 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || |||||||| | ||| ||||| | | ||| |||||||| ||||| | Sbjct 31670 ACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGGA 31729 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | | || || ||| || || | || ||||| |||| Sbjct 31730 TCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACCTCCAAGGTGATAGTCTTGC 31789 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 31790 CAGTCAGGGTCTTCACGAAGATCTGCAT 31817 Score = 104 bits (114), Expect = 5e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| |||||||||||||| |||| | |||| || || || | Sbjct 31839 CAAG-TGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTCCA 31897 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| || | ||| ||||| | | ||| |||||||| ||||||| Sbjct 31898 ACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGAA 31957 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || |||| | | | || || ||| || || | ||||| || |||| Sbjct 31958 TCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAGGTAATGGTCTTGC 32017 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||||||||||| ||||||| Sbjct 32018 CAGTCAGGGTCTTCACGAAGATCTGCATT 32046 >seq9360 Length=410125 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| |||| | || | |||||||| | Sbjct 230796 CAAG-TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCA 230738 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || |||||||| | ||| || || | | |||||||||||| ||||||| Sbjct 230737 ACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTTATCTTGAA 230678 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || || |||| | | | || || ||| || || ||||| || || |||| Sbjct 230677 TTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTGATGGTCTTGC 230618 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || |||||||| |||| |||||| Sbjct 230617 CAGTCAGGGTCTTCACAAAGATCTGCAT 230590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153554700078000