Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9661 167 5e-36 seq9457 152 1e-31 seq9360 131 4e-25 seq8969 111 3e-19 seq15779 86.0 1e-11 seq12292 86.0 1e-11 seq11448 86.0 1e-11 seq10859 86.0 1e-11 seq8262 86.0 1e-11 seq7683 86.0 1e-11 seq3669 86.0 1e-11 seq1003 86.0 1e-11 >seq9661 Length=48700 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || ||||||| || | || || ||||||||||||||||| | | Sbjct 31591 CCACCACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 31650 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||||| || || || |||||||| | ||| |||||||| || Sbjct 31651 AGGGTTCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGG 31710 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||||||||| || || || | ||||| || ||||| || || || Sbjct 31711 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACC 31770 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 31771 TCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || ||||||| || | || || ||||||||||||||||| | Sbjct 31818 ACCACCACGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGA 31877 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||| | || || || |||||||| | ||| |||||||| || Sbjct 31878 AAGGGTTCGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGG 31937 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||| || || ||| | ||||| || || || || || || Sbjct 31938 GATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCAC 31997 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || | || || ||||| || |||| ||||| ||||| ||||||||| || Sbjct 31998 CTCCAAGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTGTC 32049 >seq9457 Length=55282 Score = 152 bits (168), Expect = 1e-31 Identities = 291/426 (68%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 43974 TCGGATTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAAC 44033 ||| |||| ||||| || || || ||| | ||||| || || ||| | || || | Sbjct 33460 TCGCATTTATCAAGCCTCTACCTCTGAGCTATACGGCTTAGTACAAGAGGTGCCGCAGTC 33519 Query 44034 AGAAAGGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTG 44093 |||| ||||| |||||||| || ||| |||| || || || |||||| ||| || Sbjct 33520 TGAAACCACTCCATTTTATCCAAGGTCTCCTTATGCAGTAGCCAAATTATATGGCTACTG 33579 Query 44094 GATTTGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAA 44153 |||| ||| |||||||| | || |||| | ||| ||| || ||||| Sbjct 33580 GATTACAGTAAACTATCGCGAAGCTTACAACATGTATGCTTGCAATGGCATCCTATTCAA 33639 Query 44154 TCACGAAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGC 44213 |||||| || ||||| | |||||||| ||||||||||| | || ||| | Sbjct 33640 CCACGAATCGCCTTTGAGAGGCGAAACCTTCGTGACACGTAAAATCACTAGGGCAGTTTC 33699 Query 44214 G--AATATTTTCAACGGGACAGAAA-AATGCATGTATCTAGGAAACATAGACTCTAAAAG 44270 |||| | | || ||| || |||| ||| ||| ||||| | || | ||||| Sbjct 33700 ACAAATAGCCTTA---GGTCAGGAAGAATGTCTGTTTCTTGGAAATCTCGATGCCAAAAG 33756 Query 44271 AGATTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAG 44330 ||| ||||| ||||| || || | || ||||||||| |||| |||||||||||| Sbjct 33757 AGACTGGGGTCATGCCAAAGACTACATTGAGGCCATGTGGTTGATCTTGCAACAAGACGT 33816 Query 44331 GTCAGACGACTACGTTATTGCAACTGGAAAGACGACGAGTGTCCGTGACTTTGTAAAAAT 44390 | | || || || |||||||| ||||| | || || | || ||||| ||||||||||| Sbjct 33817 GGCGGAAGATTATGTTATTGCTACTGGTATTACCACCACCGTTCGTGATTTTGTAAAAAT 33876 Query 44391 GGCGTT 44396 ||| || Sbjct 33877 GGCCTT 33882 >seq9360 Length=410125 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || |||| || | || || || |||||||||||||| | Sbjct 230816 CCACCCCGCAGACGTAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 230757 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || | || || || |||||||| | ||| ||||| || || Sbjct 230756 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGG 230697 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||| || || || || ||| | ||||| || || || || || || Sbjct 230696 ATTCCTTCCTTATCTTGAATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACC 230637 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| ||||| || || |||||||| Sbjct 230636 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq8969 Length=73153 Score = 111 bits (122), Expect = 3e-19 Identities = 310/476 (65%), Gaps = 0/476 (0%) Strand=Plus/Minus Query 149715 TTTGCTTCGTAAAATTTACGGATGAGCGCTGGGAAAACATGACCGTTTTCGAGATCGTAT 149774 || ||||| | |||||| | || | || || || ||||| || | ||| ||||| Sbjct 64662 TTGGCTTCATGAAATTTCCTTATCATGGCCGGCAACACATGCGAATTGTTGAGGTCGTAG 64603 Query 149775 CGATCATTCGGCCCGCTTAGGTTCGTGGGCATCGCCGAGACGAAGTTGCATCCGAATTGC 149834 || || || || ||| || ||||||||| |||| | ||| |||||||| |||| Sbjct 64602 TTGTCGTTTGGACCATATAGATTGGTGGGCATCACCGAAATGAAATTGCATCCATATTGT 64543 Query 149835 TTTCTATAGGCATCGCACATCTCTATCCCCGCAATTTTTGCGATCGCGTATGGTTTGTTC 149894 | | |||||| || ||||| | ||| || || ||||| || || || || || | ||| Sbjct 64542 TCACGATAGGCCTCACACATTTTTATGCCGGCTATTTTGGCTATGGCATAAGGCTCGTTG 64483 Query 149895 GTGGGTTCGAGAGGCCCAGACATAAGATATTCTTCCTTGATTGGATTAGGCGATTCTTTC 149954 ||||||||||| |||| | | ||| || || || | ||| | ||| | ||| Sbjct 64482 GTGGGTTCGAGCAAGCCAGTTAATAAATAATCCTCTTTTAATGGCTGAGGAGCCATTTTT 64423 Query 149955 GGGTAAATACAGCTGCTACCGAGAGCGACGAGTTTCTTGACGTCGAATTGTTTTGCAGCG 150014 || ||||| ||| ||| | | | ||||| ||||| | | | | | || Sbjct 64422 GGATAAATGCAGGACGAACCCAAAAACATCAGTTTTTTGACTCCTGCTAGGTAGGAGCCG 64363 Query 150015 TGGATGACGTTCGTTTGTATCATCAAATTATCATGAATAAAATCGCCACCGAACGAATTA 150074 || || || || | || || || || || | | ||| | || | ||| | ||| Sbjct 64362 TGTATTACATTGTTCTGAATTTGCAGGTTTTCGTATAGAAATTGCCCTCTGAAGGTGTTA 64303 Query 150075 TTCGCATGAATACCTCCTACTTTTGCAGCGGCGAGAAATACGTATTCAGGAGTTTCCGTT 150134 || || || || |||||||| || || || | ||| || || ||||| |||| || Sbjct 64302 TTGGCCACTATTCCGCCTACTTTGGCTGCTGCCAAAAACACATAATCAGGTTTTTCTTTT 64243 Query 150135 TTGAAAAATGCGTTCACTTCATTTTGGTTCGTTAGATCTAATTCTTTAGACGTTCT 150190 | || |||| | || ||| |||| || | || |||||||| || || ||||| Sbjct 64242 TCGAGAAATTCAAAAACCTCAGTTTGATTTCTAAGGTCTAATTCCTTGGAGGTTCT 64187 >seq15779 Length=1152238 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 559711 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 559767 >seq12292 Length=257813 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 223232 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 223176 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 223605 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 223549 >seq11448 Length=766531 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 395375 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 395319 >seq10859 Length=313708 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 176773 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 176717 >seq8262 Length=289 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 112 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 168 >seq7683 Length=315 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 232 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 288 >seq3669 Length=503006 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 285505 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 285561 >seq1003 Length=166183 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 72661 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 72605 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 74385 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 74441 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 118679 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 118735 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 120275 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 120219 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 120577 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 120521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046497795772000