Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9661 145 5e-30 seq9360 131 1e-25 >seq9661 Length=48700 Score = 145 bits (160), Expect = 5e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||| ||| || || |||||||||||||||||| || Sbjct 31815 CATACCACCACGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTC 31874 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || |||| |||| |||||| || |||||||| | |||||| || || | Sbjct 31875 GGAAAGGGTTCGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGG 31934 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| || |||||| |||| | |||| | ||||| || | || | Sbjct 31935 AGGGATGCCTTCCTTATCTTGAATCTTCGCCTTC-ACGTTCTCGATGGTATCAGAGGCCT 31993 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| ||||| ||||| || || ||||||||||||||||| ||||| Sbjct 31994 CCACCTCCAAGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 32045 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||| ||| || || |||||||||||||||||| |||| Sbjct 31591 CCACCACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 31650 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || || | |||||| || |||||||| | |||||| || || | ||| Sbjct 31651 AGGGTTCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGG 31710 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| || |||||| ||||| | | ||||| || | || |||||| Sbjct 31711 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACC 31770 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 31771 TCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 >seq9360 Length=410125 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||| |||| || ||| | || || Sbjct 230799 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTC 230740 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || |||||||| | |||||| ||||| | ||| | |||||||| || Sbjct 230739 CAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTTATCTTG 230680 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || ||||| |||| | ||||| |||| || |||||||||| || || |||| Sbjct 230679 AATTTTGGCCTTCAC-GTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTGATGGTCT 230621 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || ||||||||||| ||||| ||||| Sbjct 230620 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359911427106000