Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10870 134 3e-26 seq9661 132 1e-25 seq9360 127 5e-24 seq15668 91.5 4e-13 >seq10870 Length=359794 Score = 134 bits (148), Expect = 3e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| |||||||| || || || |||||||| |||||||| || ||| Sbjct 75387 CAGATCTTTGTGAAGACTCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCTTCTGAC 75446 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||| ||||||||||| ||||| || || || ||||| || Sbjct 75447 ACAATTGAAAATGTCAAAGCAAAAATTCAGGACAAGGAAGGTATTCCCCCTGACCAACAG 75506 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG 178082 ||||||||||||| ||||| || || |||||||| ||| Sbjct 75507 AGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGCAGG 75545 >seq9661 Length=48700 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||| | |||||||| ||| || Sbjct 31814 CAGATCTTCGTGAAGACCCTGACTGGCAAGACTATCACCTTGGAGGTGGAGGCCTCGGAT 31755 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || || || ||||| |||||||| ||||| || Sbjct 31754 ACCATCGAGAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCTCCCGACCAACAG 31695 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||| | || ||||| | || ||| |||| || ||| || Sbjct 31694 CGTCTTATCTTTGCTGGCAAGCAGTTAGAGGATGGCCGAACCCTTTCCGACTACAACATC 31635 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 31634 CAAAAGGAGTCTACCCTCCA-CTTG 31611 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || || ||| | |||||||| ||| || Sbjct 32042 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCTTGGAGGTGGAGGCCTCTGAT 31983 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||||| || || ||||| |||||||| ||||| || Sbjct 31982 ACCATCGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCAACAG 31923 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | || || || | || ||| |||| || ||| || Sbjct 31922 CGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGAACCCTTTCCGACTACAACATC 31863 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || ||||| || || |||| Sbjct 31862 CAAAAGGAGTCAACCCTCCA-CTTG 31839 >seq9360 Length=410125 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || |||||||| ||| || Sbjct 230593 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCCGAT 230652 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || || ||||| || || |||||||||||||| || || || Sbjct 230653 ACCATCGAGAACGTGAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCCGATCAACAG 230712 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||| | |||||||| | || || |||| || ||| || Sbjct 230713 CGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAACATC 230772 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 230773 CAGAAGGAGTCTACCCTCCA-CTTG 230796 >seq15668 Length=647317 Score = 91.5 bits (100), Expect = 4e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||||||||| || || || || || | || || ||| || ||| Sbjct 380171 CAGATCTTTGTGAAAACTCTCACTGGGAAGACAATTACGTTGGAAGTTGAAGCTTCTGAC 380230 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || ||| || ||||| |||||||| || || ||||| ||||| || Sbjct 380231 TCAATTGAAAATGTTAAATCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGACCAACAG 380290 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | ||||| || || || ||||| |||||||| Sbjct 380291 AGATTAATCTTTGCTGGCAAGCAGCTTGAAGATGG 380325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203453589492000