Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9998 129 1e-24 seq66076 116 8e-21 seq6256 89.7 1e-12 seq5884 84.2 5e-11 >seq9998 Length=203 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 |||||||| ||||||||||| ||||| |||||||||||| || |||| ||||| || Sbjct 39 CAAGCATCCACATCTGAACTTTATGGTTTAGTTCAAGAAATACCGCAAAAAGAAACAACG 98 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 ||||||||||| |||||||| |||| ||| |||||| | || || |||||||| | Sbjct 99 CCGTTTTATCCACGTAGCCCCTATGCTGTAGCAAAAATGTATGCCTACTGGATCACGATT 158 Query 61209 AATTACCGCGAGTCGTATGGAATGTTTGTATGTAAC 61244 || || |||||| | ||||| || | || |||||| Sbjct 159 AACTATCGCGAGGCTTATGGCATCTATGCCTGTAAC 194 >seq66076 Length=3687 Score = 116 bits (128), Expect = 8e-21 Identities = 274/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 281541 TTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATA 281600 || || ||||| ||| |||| |||||| | ||||| || ||| ||| || || || || Sbjct 620 TTCTCAACGATATCTCTGGGGTTATAATTAGGAATTTTGGTACTCCATCCCGTGCCTATC 679 Query 281601 CCACTTGAACCATTTACCAAAATAC--TCGGGATAATAGGTACATAACATTCTGGTTCAA 281658 || | ||||| || || ||| |||| ||||| || |||||| |||| ||||||| Sbjct 680 CCTTCAGCCCCATTCAC--AAGTACCATCGGAATAATCGGCACATAATATTCGGGTTCAA 737 Query 281659 TTTTATCACCATCATCATACAAATACTTCAGAAGGTTATCATCTG-TATCGACGAAA-AC 281716 |||| | ||||||||| | | |||| || |||||| | | || |||| | Sbjct 738 TTTTTAAATTATCATCATAAAGGAAATTCAATAGCGGATCATCCGCCACCG--GAAAGAT 795 Query 281717 CTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACC 281776 | || || | |||| | || | || || ||||| | | ||||||| |||||||| Sbjct 796 TTTTCTCGCCAAAGGGCTGAGCATTGTAAATATATAACGGGGACTCGCGGCATCTTTACC 855 Query 281777 ACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCC 281836 ||||| || | | || |||||||| ||| || |||| |||||| ||||| Sbjct 856 CCCCTGAAGACGTGTACCGAACTGACCGATCGGTTGTAATAGATTAACGTTATTACTCCC 915 Query 281837 GACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATA 281896 |||||||| ||| |||| || || ||| | | ||||| || ||||| ||||| Sbjct 916 GACGTAATTCTGTGCCAAACCGATAATGGTCGACATTAATGATACTTCTCCGTGATGATA 975 Query 281897 GGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTC 281944 ||| ||||| | ||| | || || ||||| || || || || Sbjct 976 CGCGGAATGTTCACCGACAGACCCCGCTAATTGTGCGACTTTTACTTC 1023 >seq6256 Length=11795 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 6113 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 6054 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6053 CCCACGTTGGGC 6042 >seq5884 Length=32987 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 61085 TTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAG 61144 || ||| |||||||| ||| ||||||| ||||| || |||||||| |||||||||| Sbjct 22768 TTATCAGGCATCAACGAGTGAGTTGTATGGGAAAGTACAGGAAATTCCCCAAACAGAAAA 22709 Query 61145 GACTCCGTTTTATCCTCGTAGCCCGTATGGT 61175 ||| ||||||||||| ||| || |||||| Sbjct 22708 GACACCGTTTTATCCGCGTTCACCTTATGGT 22678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1055920442736870