Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq21474 165 8e-36 >seq21474 Length=6928 Score = 165 bits (182), Expect = 8e-36 Identities = 245/345 (71%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 |||| ||| || ||| | ||| || ||| |||| || ||| ||| | | | ||| Sbjct 6056 CCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTACACAG 5997 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 ||||| || || || |||||||| || || |||||||| || || || || Sbjct 5996 TTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACA 5937 Query 16898 GCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 ||||| ||| ||||| || | | |||| | | ||| ||| | ||||||||| Sbjct 5936 GCTTCAGTAACAATACGAGTGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTAAAG 5877 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTC-TGCTGATAAGTTCGTTAGAAAA 17016 | | ||| |||||||| ||||| | |||||| || | || | || ||||| ||| || Sbjct 5876 AGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGAT-ATCAGTTCATTACTGAA 5818 Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076 ||||| || ||||| ||| |||||||||| ||||||||| | |||||| || || Sbjct 5817 GGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCT 5758 Query 17077 AAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGC 17121 ||||||||||||||| || ||||||||||| | ||| |||||||| Sbjct 5757 AAAGAATATACCCTCAACTGATGCAAACGCAACTAAACGTTCGGC 5713 Score = 105 bits (116), Expect = 7e-18 Identities = 95/117 (81%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 |||||||| || || | ||| || |||||||| || ||||| ||||| || || || ||| Sbjct 5240 ATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTGA 5181 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTA-GAATCGTTCCGC 17349 || |||||||||||||| ||||| | | ||||||||| ||| | |||||||||||| Sbjct 5180 AACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTC-ACGAACGAATCGTTCCGC 5125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516636990475320