Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq21474 120 3e-22 >seq21474 Length=6928 Score = 120 bits (132), Expect = 3e-22 Identities = 269/396 (68%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 16016 CCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCA 16074 |||| ||| | | ||| | ||| || ||| |||| || ||| ||| | ||| | || Sbjct 6056 CCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTAT-GACTTCATCAGTACACA 5998 Query 16075 ATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAAC 16134 || || || || ||| |||||||| || | || ||||| | ||||| || || Sbjct 5997 GTTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCAC 5938 Query 16135 CGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAA 16194 ||||| ||| ||| ||| | || | | ||| ||| | |||||||| Sbjct 5937 AGCTTCAGTAACAATACGAGTGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTAAA 5878 Query 16195 CATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTGGAAA 16253 | || ||||||||| || ||||| ||||| || || | || | || ||||| || | Sbjct 5877 GAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGAT-ATCAGTTCATTACTGA 5819 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 | || || || ||||| ||| |||||||||| ||| ||||| | || ||||| || Sbjct 5818 AGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGC 5759 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTT 16373 |||||||||||||||||| |||||||| || | ||| ||||| || | || ||| || Sbjct 5758 TAAAGAATATACCCTCAACTGATGCAAACGCAACTAAACGTTCGGCAAATGTGGCA-GTT 5700 Query 16374 TATTACGA-ATCCATTTCTGTACCCATTCGGCTTTT 16408 | |||| |||| | || |||||| ||| ||| Sbjct 5699 TCCGACGATGTCCACGACAGTGCCCATTTGGCCTTT 5664 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 |||||||| ||||||| || ||| |||||||| || ||||| ||||| || || || ||| Sbjct 5240 ATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTGA 5181 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAA-AATCGTTCCGCC 16588 || || || |||||||| || || | | ||| ||||| ||| | |||||||||||| Sbjct 5180 AACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTC-ACGAACGAATCGTTCCGCC 5124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510516554486680