Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8365 643 1e-179 seq21474 136 5e-27 >seq8365 Length=5311 Score = 643 bits (712), Expect = 1e-179 Identities = 1532/2292 (67%), Gaps = 54/2292 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| | | | |||||||||||||| | ||||||||| ||||| |||| Sbjct 618 GTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAAC 677 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAG-TTTGGAATAACTCGGATCTGCTAT 52926 || | |||| |||| ||| ||||| ||| | |||| || | || |||| || Sbjct 678 CCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCATTG-TGGGTGCTGCGAT 736 Query 52927 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 ||| || || | ||||| ||||| || ||||| || || | || |||| ||||| || Sbjct 737 ATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAAT 796 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046 | || |||| |||||||| | ||||| || | | ||| | ||| | |||| Sbjct 797 AACTGTACGCTGTGATATTTCCCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAAT 856 Query 53047 GTTTGTATTC---TGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 | || ||||| ||||| || || || |||||| | | |||||| Sbjct 857 TCCCTCAATCAATTGAATCGATCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATT 916 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| | || | || || ||| |||| | ||||| ||||||| | |||||||||||| Sbjct 917 CCAAAGTTCACGTTCAGTCAAATCTCTCAAAAGATGATGATTAACGATTTGAAATTCTCC 976 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 ||||| ||||| || | || |||||||| ||||||| ||| |||||||| |||||||| Sbjct 977 GGACAAAACTCTTCGTGAATATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCC 1036 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 |||||| || || || ||||| |||||||| ||||| | ||| | ||| || || || || Sbjct 1037 CAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCC 1096 Query 53284 GTATGTTCTGATTTTATCTTTTAGAGGTTC---CCAATTCCAAAGATCCGACGGTACAAC 53340 || || |||| || || || || ||| ||||||||| || || | |||| Sbjct 1097 GTGCATTTTGATCTTTTCCTTCAG---TTCAGTCCAATTCCATAGGTCTGTCGGTGTCTT 1153 Query 53341 NNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 53400 || || || || ||| |||| || || |||||| ||||| Sbjct 1154 ATTCCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTA 1213 Query 53401 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460 || || | || | || | ||||||||||| || | || ||| |||| | || || Sbjct 1214 AGGACCATACTGTTGTGCCAATTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTC 1273 Query 53461 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 53520 || || | |||| ||| || ||||| | || ||||| || ||| | |||||| Sbjct 1274 AAATATTTGAATATTGAGACGTTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAAT 1333 Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580 ||||| || |||||||| ||||| ||||| || || || | | || ||||| ||| Sbjct 1334 GAACGCATCGGCTAATCCCTGAACTCCAATGCCAATCGGACGGTTCCTTTTATTGGAGCG 1393 Query 53581 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAAT 53640 ||| | ||| |||| ||||||||||||||||| ||||| ||||| | ||||| | ||| Sbjct 1394 TTCCGTTTCAGGAACGGGATAATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAAT 1453 Query 53641 TACTTTGACCACATCCTTCAG-TTTGAGAAAATCAAATTGTCCATCTATT-------ACA 53692 ||||| | |||||||| || |||| ||| ||||| || | | || || Sbjct 1454 GACTTTAGCGACATCCTTGAGCTTTGCGAAG-TCAAAG-GTGCGGGTTTTGGTGTCGACG 1511 Query 53693 AACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATAT 53752 ||| || | ||| | || |||| |||||| ||||| | || | | | | |||| Sbjct 1512 AACCGATTGAGTGCGACTGAAGCCAAATTACACACGGCAATTTCGTCGGGAGATGAATAT 1571 Query 53753 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 53812 | | || |||||||| ||||| || || |||||||| | |||||||||||| | Sbjct 1572 TCAACGATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGAC 1631 Query 53813 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCT 53872 ||| ||| || || ||||||| ||| | || || || || || ||||| | || Sbjct 1632 TTTCGGTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCG 1691 Query 53873 ATAATCGCTTTCCAGAC-GACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTC 53931 | ||| || | ||| | ||| ||||| | | ||||||| ||||||||||||| Sbjct 1692 ACAATGGCATACCACAATGACT-GAGCCCGAACCTGACGTTTGTATTTCTTTTCTCTTTC 1750 Query 53932 GTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 53991 |||| ||| || |||||| | | ||||| | | || || || ||||| Sbjct 1751 GTATTTCTCATATAAATCCTCAAACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTC 1810 Query 53992 ATCCGGACACATCAACGACCACTCTCCGTCATCC--TTCA-CTCGTTTCATAAAGAGATC 54048 | ||||||||||| ||||| | ||| |||| |||| | |||||||| || | ||| Sbjct 1811 GTGTGGACACATCAATGACCA-TATCC--CATCGGATTCAACACGTTTCATGAACAAATC 1867 Query 54049 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTC-TATGTTCCTCGTTTCCTGTATTC 54106 ||||||||||| || ||| || | || | | | ||| |||||| || || ||| Sbjct 1868 GGGAATCCAAAG-GCCATAGAACAAGTCACGTGCACGTAT-TTCCTCAGAACCCGTGTTC 1925 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || |||| |||||||| | | | ||| | |||||||||||| | ||| | | | | Sbjct 1926 TTCCTAAGGTCGAGGAATTCGAATACATCGGCATGCCACGGTTCGATGTAAACTGCGAAA 1985 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | || || |||||||| || |||||||| | ||||| || || || || | || | | Sbjct 1986 GCGCCGGGACGTTTGTTCCCCCCCTGATCGACGTATCGGGCAGTATTGTTGAACACGCGC 2045 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 ||||| || | | ||||| ||| ||||| || || | ||||| | || | || Sbjct 2046 AACATCGGGACCAATCCATTTGATATGCCATTCGTACCCGCAATATAAGTGCCCTTAGCC 2105 Query 54287 CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 | || | || || || || || || || ||| || || | |||||| || Sbjct 2106 CTTATGCAATGAACATTTATTCCGATACCACCGGCAGCTTTCGATATGACAGCGCATTGT 2165 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 || | || || || || ||||| ||||| ||||| ||||| | | || ||||| || Sbjct 2166 TTGAGTGTGTCGTAAATCCCCTCAATACTGTCATCTTTCATGGTCAATAAGAAACAACTG 2225 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 |||| ||| | | |||||| ||||| || | || || || || || ||||||||| Sbjct 2226 GACAATTGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCGGTGATGCATGAGTAAACCAT 2285 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCT 54526 ||| || | ||||| |||||||| || || | ||| || || | || || || Sbjct 2286 CGTTCGGACATGAGATTATACGTCTCAATGGCAGCGTCAATGTCATTTCCGTGTATCCCC 2345 Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGC 54586 || ||||||||||| | ||||||||| |||| ||| ||| || | || || || | Sbjct 2346 ACAGCGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGACTTTCCTATTGATCTTAATT 2405 Query 54587 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT-ATGAAAAGTCTCGTTCGTA 54645 || || || || | ||||| ||||| ||||| |||| |||| || || || || || Sbjct 2406 AAATATGACCGCTCAAGTGTTTTGAAACCGAAATAATTGTAATGATAA-TCGCGATCATA 2464 Query 54646 AATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT--- 54702 ||| || | || |||||| || || || | || ||||| |||| || Sbjct 2465 AATGATGGCGGAATTGAGTCGTTCGGCATTCTTTTCAATGACATC----GTAAATCTCAT 2520 Query 54703 -TGAAATAATCGGAGAATGTTT----CCCATT-TTTAGGATTGACATAGTTAAATAAATC 54756 |||||| ||||| ||||| ||||| | | || |||| | | | | ||| Sbjct 2521 CTGAAATCATCGG----TGTTTTGAGACCATTACTCTCGTTTCTCATA-TGATAGAGATC 2575 Query 54757 CTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 54816 | | || || || ||| ||| ||||||||||| |||| |||||| || || || | Sbjct 2576 CCTAATGACATCGGAAAAGTTTTTCTTTGTTTCTTTATGTAAATTTGACACTGCAATACG 2635 Query 54817 AGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGT 54876 || || ||||| |||||||| | ||||| || || || || || ||||| || | Sbjct 2636 TGCCGCGAGAATAGCATAATCGGCATGTTTCGTTGTCATTGTTGCGGCGATTTCCGCCGC 2695 Query 54877 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 | | | |||||||| || || || || || |||||| || ||| ||||||| | Sbjct 2696 TAAATTATCCAATTCAACGGTCGTGACACCCGAATATATCCCGGCGATGACCTTCAATGT 2755 Query 54937 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGA 54996 ||| | ||| || | || ||| || ||||| || | ||| || || || Sbjct 2756 GATTGACGGTGCATCGATGTAATTCATGTCCAAACCATAGCAGAGTTTCACGATTCGGGA 2815 Query 54997 TGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 55056 ||||||||| || ||||| || ||| || ||| | || |||||| ||| ||||||| Sbjct 2816 TGTGATTTTGTCGAACATAACTGATTCTTTTCGTCCGTCTCTTTTAATTACATACATTTT 2875 Query 55057 TGTTGGTGTAAT 55068 || |||| ||| Sbjct 2876 TG-CGGTGCAAT 2886 >seq21474 Length=6928 Score = 136 bits (150), Expect = 5e-27 Identities = 153/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 24517 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 24576 ||||||| ||||| || ||||||||||| || || ||||||||||| |||||| ||||| Sbjct 4578 CTAAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATAA 4519 Query 24577 AATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCCACT 24635 ||| ||| | || || ||| | | |||||| | ||||| | | ||||||| Sbjct 4518 AATGACGTTCAT-TGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCACT 4460 Query 24636 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATAT 24695 ||||| || |||||||| ||||||||||| || |||||||| |||| || || ||||| Sbjct 4459 TCTTCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATAC 4400 Query 24696 TGAATTGGAAAAATAACAAATC 24717 | ||| || || || || |||| Sbjct 4399 TCAATCGGGAACATTACGAATC 4378 Score = 123 bits (136), Expect = 3e-23 Identities = 226/331 (68%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 ||||||||| | || | ||| |||||| | || || |||| ||||||| | |||| Sbjct 6056 CCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTACACAG 5997 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 ||||| || || ||| || ||||| || | || | ||| || |||||||| | || Sbjct 5996 TTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACA 5937 Query 24069 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 24128 || || || | |||| | | | ||| | | ||| || | | ||||||||| Sbjct 5936 GCTTCAGTAACAATACGAGTGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTAAAG 5877 Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 | ||||| |||||||| || || || ||||| || | || | ||| || || Sbjct 5876 AGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACTGAAG 5817 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 24248 || | ||| ||||| || ||||| || || ||||||||||| || || ||||| || | Sbjct 5816 GTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTA 5757 Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 ||||| || || || |||| ||||| |||| Sbjct 5756 AAGAATATACCCTCAACTGATGCAAACGCAA 5726 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 24401 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 24460 || ||| || |||||||| |||||||||||||||||||| || || ||||| || ||||| Sbjct 5241 AATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTG 5182 Query 24461 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGC 24517 ||| ||||| || |||| || || |||| || ||||| | |||||||| || Sbjct 5181 AAACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCACGAACGAATCGTTCCGC 5125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 23787 CTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATT 23843 ||| ||||||| |||| ||| ||| | || ||||||| | ||||| || || | Sbjct 6527 CTTCAAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATTGGACATTACACCACTC 6468 Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 ||||| ||||| || || | || || || ||||| ||||| || || ||||| || | | Sbjct 6467 TTTTGATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCCCTCCAATGAAATCTGT 6408 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAA 23947 |||||||||||| | ||||| | |||||| || |||| ||| Sbjct 6407 TCCATGAAATCGAAAGGATTCGACGAATTATA-ATACTTTAAAA 6365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592679254937520