Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq21107 102 7e-17 seq17817 100 2e-16 >seq21107 Length=15695 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||| ||||| || ||||| ||||| || | || || | |||| Sbjct 13698 AGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCT 13639 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||||| ||||| | || |||||||| || ||| ||| | ||||| ||||| Sbjct 13638 TCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCC 13579 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | ||| ||||| || ||| ||||| || || || Sbjct 13578 TGTATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTT 13519 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || |||||||| ||||| ||||| |||||||||||| Sbjct 13518 TTACCGGTTAATGTTTTCACAAAGATTTGCATTTTG 13483 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| || ||||||||||| |||||||||| || || || ||||||| | ||||| || Sbjct 14985 AGTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTACGGCCGTCCTCTAATTGTTTTCC 14926 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| | || || | |||||| ||| || | || || || || || || ||| Sbjct 14925 GGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCTTTATCTTGAATTTTCGCTTT 14866 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 ||| | ||| |||||| ||| ||| |||| || ||||| || ||||| | || Sbjct 14865 CACGTTTTCGATGGTATCAGAGGGTTCCACCTCCAATGTGATGGTTTTACCGGTGAGAGT 14806 Query 21158 TTTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 14805 CTTGACGAAGATCTGCAT 14788 >seq17817 Length=30685 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 20988 TTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATA 21047 ||||| || ||||| || | || || | |||| |||| ||||| |||||| |||| Sbjct 811 TTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAATG 752 Query 21048 AGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCG 21107 |||||||| || ||| ||| | ||||| ||||| ||||| ||| || | | Sbjct 751 AGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCTCT 692 Query 21108 ACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAAT 21167 | ||||||| || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 691 ATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAAAG 632 Query 21168 ATTTGCATTTTGAAT 21182 ||||||||||| ||| Sbjct 631 ATTTGCATTTTTAAT 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421536409558484