Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq21107 131 2e-25 seq32426 113 5e-20 seq21474 95.1 1e-14 seq68991 93.3 4e-14 >seq21107 Length=15695 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| |||||||||||||| | || || ||| || || Sbjct 13943 ATGCAGATCTTCGTTAAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCC 14002 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || |||| || |||||||| || ||| |||| || Sbjct 14003 GATACCATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAGGGAATTCCCCCGGATCAA 14062 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| || | |||||| ||||| |||| |||| || || |||| ||| ||||| Sbjct 14063 CAGAGACTTATTTTCGCGGGAAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAAT 14122 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| ||| | || || ||| |||| ||||| | ||||| || Sbjct 14123 ATTCAGAAAGAGTCGACTCTCCATTTAGTATTGCGTCTCAGGGGAGG 14169 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || |||||||| | || || ||| | | Sbjct 14171 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACCATCACATTGGAGGTGGAACCGTCT 14230 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | |||| || |||| ||||||||||| || ||| | || || Sbjct 14231 GATACTATCGAAAACGTT-AAGGCTAAGATTCAAGACAAAGAGGGAATTCCCCCCGATCA 14289 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||||| ||||| |||| |||| || || |||| ||| ||||| Sbjct 14290 GCAGCGGTTGATTTTTGCGGGGAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAA 14349 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| ||| | || || ||| | || |||| Sbjct 14350 TATTCAGAAAGAGTCGACTCTCCATTTGGTACTGCG 14385 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || |||||||| || | || || ||| | | | Sbjct 14560 ATGCAAATCTTTGTCAAAACACTCACCGGTAAAACCATTACATTGGAAGTTGAACCGAGC 14619 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | |||| ||||||| ||||||||||| || ||| | || ||| Sbjct 14620 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGACAAAGAGGGTATTCCCCCCGATCAG 14679 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| || ||||| || || || | || || || ||| || || Sbjct 14680 CAGCGATTGATTTTCGCCGGGAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 14739 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| | || || || |||| || || Sbjct 14740 ATCCAAAAGGAGTCGACTCTCCACTTAGTCTTACG 14774 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||||||||| | || || ||| || | Sbjct 14788 ATGCAGATCTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAGGTGGAACCCTCT 14847 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| | || | ||||||| || |||||||| || || |||| || Sbjct 14848 GATACCATCGAAAACG-TGAAAGCGAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCA 14906 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || ||||| | || |||| || || ||| ||||| || Sbjct 14907 GCAGCGTCTGATCTTTGCCGGAAAACAATTAGAGGACGGCCGTACTCTCTCGGACTATAA 14966 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||| | || || || || || ||||| Sbjct 14967 TATTCAAAAGGAATCGACTCTTCACCTCGTCTTGCG 15002 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| || || ||||| | || || ||||| ||||| | || || ||| | Sbjct 13484 AAAATGCAAATCTTTGTGAAAACATTAACCGGTAAAACGATCACTTTGGAAGTGGAACCG 13543 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| || || | |||||||| || || ||| |||| Sbjct 13544 TCGGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGAT 13603 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || ||||||||| |||||| ||||| |||| |||| || || || ||| || Sbjct 13604 CAACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATTAT 13663 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || ||||| ||| | || || ||| | || | ||| | ||||| || Sbjct 13664 AATATTCAGAAAGAGTCGACTCTCCATTTGGTTCTTCGCCTCAGGGGAGG 13713 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||||||||| || | || || || | | | Sbjct 13715 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACCATTACATTGGAAGTTGAGCCGAGC 13774 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| ||||||| || |||||||| || ||| | || ||| Sbjct 13775 GATACCATTGAGAATGTTAAGGCCAAAATTCAAGATAAAGAGGGTATTCCCCCCGATCAG 13834 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| || ||||| || || || | || || || ||| || || Sbjct 13835 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 13894 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || |||||| | || || || |||| || || Sbjct 13895 ATTCAAAAGGAGTCGACTCTCCACTTAGTCTTACG 13929 >seq32426 Length=2656 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| ||||| |||| |||||||| ||||| | || || ||| || | Sbjct 433 ATGCAAATATTCGTGAAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCA 374 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||||| || |||||||| || || |||| || Sbjct 373 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAA 314 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || ||||| |||| |||| || || ||| |||||||| Sbjct 313 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTACAAT 254 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||| | || || || || || ||||| Sbjct 253 ATTCAAAAGGAATCGACTCTTCACCTCGTCTTGCG 219 >seq21474 Length=6928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 178/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || || ||||| || | |||||||| | |||||| | ||||| ||| ||| Sbjct 5629 TTCAATGCGATCGAAACCCTCCCGTGCGTGACCCGAAAGGCCAAATGGGCACTGTCGTGG 5688 Query 117008 ATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 | | || | || | ||| | || | ||| || | || || || || | || ||||| Sbjct 5689 A-CATCGTCGGAAACTGCCACATTTGCCGAACGTTTAGTTGCGTTTGCATCAGTTGAGGG 5747 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | |||||| || |||||| | ||||||||||| |||||||| || || ||||| Sbjct 5748 TATATTCTTTAGCGGTTCATTCGCCTCAATATTTTGGCTAAAGAAACGTGGACTTATGCC 5807 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 || |||| ||||| || || || || || | || ||||| || ||||| || || || Sbjct 5808 GGGATTGACCTTCAGTAATGAACTGATATCACGTGATGAGGGACTTCATTGTGATTTCGC 5867 Query 117187 CTGTTTGCTGTTCAAGCAT 117205 ||||| || || || ||| Sbjct 5868 GTGTTTACTCTTTAAACAT 5886 >seq68991 Length=328 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| ||||| ||||| || |||||||| || | || |||||| || || Sbjct 171 ATGCAAATATTCGTGAAAACTCTCACCGGTAAAACCATTACATTGGAAGTCGAACCCTCC 112 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||| | ||||| | |||||||| || || ||| |||| || Sbjct 111 GATACTATCGAAAATGTCAAAGCGAAAATACAGGACAAAGAAGGGATTCCCCCGGATCAA 52 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCA 40858 || || || |||| || || ||||| |||| || | || || |||| Sbjct 51 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAAGATGGACGTACACTCA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514314674732240