Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq128062 131 3e-25 seq32426 123 4e-23 seq21107 122 1e-22 seq68991 114 2e-20 seq17817 114 2e-20 seq24747 96.9 5e-15 seq14450 96.9 5e-15 seq13214 86.0 9e-12 >seq128062 Length=3476 Score = 131 bits (144), Expect = 3e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 176186 TTTAAAATTTTTAACTGTCATTAATATCCATGTTTTTTGAACTAAATTATTATGTTTTAT 176245 ||||||||| | | ||| | ||| || ||||||||||| |||||||||||| | ||| Sbjct 1554 TTTAAAATTATCAGTTGTTAATAAAATTCATGTTTTTTGTACTAAATTATTAGGAGTTAA 1495 Query 176246 AGATTTAATATCATTTTGtatatattcatattctaatactaatggattatcatatttaat 176305 | |||||| || ||||||||||||||||||||||| |||| ||||||| | |||||| Sbjct 1494 ATTTTTAATCTCGTTTTGTATATATTCATATTCTAAAGCTAAAGGATTATTGTGTTTAAT 1435 Query 176306 ttctatatattctaaattataattTTT 176332 |||| |||| | ||||| |||||| Sbjct 1434 TTCTGTATAAGAAATATTATTATTTTT 1408 >seq32426 Length=2656 Score = 123 bits (136), Expect = 4e-23 Identities = 183/258 (71%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | || ||||| | ||||||||||| ||| | || | ||| | Sbjct 433 ATGCAAATATTCGTGAAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCA 374 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||||||||| || || || || |||||| Sbjct 373 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAA 314 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||||||||| ||||| | || || | || || ||| Sbjct 313 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTACAAT 254 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAAATTC 124777 |||||||| ||||| ||| | || | || || ||| | || || || ||||| | ||| Sbjct 253 ATTCAAAAGGAATCGACTCTTCACCTCGTCTTGCGTCTGCGCGGAGGTTATTAGATATT- 195 Query 124778 ATAAAAATTGATTGTAAA 124795 || |||||| |||| Sbjct 194 ---TAACTTGATTTTAAA 180 Score = 86.0 bits (94), Expect = 9e-12 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||| ||| || | || ||||| || || ||| |||| || | || |||| | | Sbjct 661 AATGCCAATCCTTTTCAAAACACTCACCGGTAAAGCTATTACATTGGAAGTTGAGCCGAG 602 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| |||| ||||| || || ||||| ||||| || || ||||| Sbjct 601 CGATACCATCGAAAATGTAAAGGCCAAAATACAGGACAAAGAGGGTATTCCTCCCGATCA 542 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || || | || |||||| | || ||| | || ||| | ||||||| Sbjct 541 GCAGCGATTGATCTTCTCCGGGAAACAACTCGAAGATGGACGTACACTGTCCAATTATAA 482 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777 ||||||||| || || ||| | || || || |||||| | || || || ||| |||| Sbjct 481 TATTCAAAAGGAGTCGACTCTCCACTTAGTGTTACGTCTCCGCGGGGGATGCAAATATTC 422 Query 124778 ATAAAAA 124784 | |||| Sbjct 421 GTGAAAA 415 >seq21107 Length=15695 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || |||||||| || || | || |||| | | Sbjct 13715 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACCATTACATTGGAAGTTGAGCCGAGC 13774 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||||||||||||||||| ||||| || || ||||| Sbjct 13775 GATACCATTGAGAATGTTAAGGCCAAAATTCAAGATAAAGAGGGTATTCCCCCCGATCAG 13834 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || ||||||||| | || ||| | || ||| | ||||||||| Sbjct 13835 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 13894 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| | || || || |||||| | || || || || Sbjct 13895 ATTCAAAAGGAGTCGACTCTCCACTTAGTCTTACGTCTCCGCGGGGGGAT 13944 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || |||||||| || ||| | || | ||| | Sbjct 13943 ATGCAGATCTTCGTTAAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCC 14002 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || ||||| |||||||| || || || || |||||| Sbjct 14003 GATACCATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAGGGAATTCCCCCGGATCAA 14062 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || |||||||| || ||||||||||| ||||| | || || | ||||| ||| Sbjct 14063 CAGAGACTTATTTTCGCGGGAAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAAT 14122 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || ||| | ||||| || || ||| | | || ||||| Sbjct 14123 ATTCAGAAAGAGTCGACTCTCCATTTAGTATTGCGTCTCAGGGGAGGTAT 14172 Score = 118 bits (130), Expect = 2e-21 Identities = 182/258 (71%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || ||||| || || | ||| | ||| | | Sbjct 14788 ATGCAGATCTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAGGTGGAACCCTCT 14847 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | ||| |||||||||||||||||| || || || || ||||| Sbjct 14848 GATACCATCGAAAACGTGAAAGCGAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAG 14907 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||||||||||||||| | || || | || |||||| Sbjct 14908 CAGCGTCTGATCTTTGCCGGAAAACAATTAGAGGACGGCCGTACTCTCTCGGACTATAAT 14967 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAAATTC 124777 |||||||| ||||| ||| | || | || || ||| | || || || ||||| | | Sbjct 14968 ATTCAAAAGGAATCGACTCTTCACCTCGTCTTGCGTCTGCGCGGAGGTTATTAGA----C 15023 Query 124778 ATAAAAATTGATTGTAAA 124795 || || |||||| |||| Sbjct 15024 ATTTAATTTGATTTTAAA 15041 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| || || ||||| || || | || ||||| | | Sbjct 14560 ATGCAAATCTTTGTCAAAACACTCACCGGTAAAACCATTACATTGGAAGTTGAACCGAGC 14619 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| |||| ||||||||||| ||||| ||||| || || ||||| Sbjct 14620 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGACAAAGAGGGTATTCCCCCCGATCAG 14679 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || |||||| | || ||| | || ||| | ||||||||| Sbjct 14680 CAGCGATTGATTTTCGCCGGGAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 14739 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || ||| | || || || |||||| | || || || || Sbjct 14740 ATCCAAAAGGAGTCGACTCTCCACTTAGTCTTACGTCTCCGCGGGGGGAT 14789 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || ||| |||| || ||||| || ||| | || | ||| | Sbjct 13486 AATGCAAATCTTTGTGAAAACATTAACCGGTAAAACGATCACTTTGGAAGTGGAACCGTC 13545 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| |||| ||| || || || |||||||| || || || ||||| Sbjct 13546 GGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGATCA 13605 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || || || || |||||||| || || | || || | |||||||| Sbjct 13606 ACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATTATAA 13665 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| ||||| || ||| | ||||||||| Sbjct 13666 TATTCAGAAAGAGTCGACTCTCCATTTGGTT 13696 >seq68991 Length=328 Score = 114 bits (126), Expect = 2e-20 Identities = 124/163 (76%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||||||||| ||||| || || |||||||| | || || ||||| || ||| Sbjct 315 AAAATTCAAGATAAAGAGGGTATTCCCCCGGATCAACAGCGTCTGATCTTTGCCGGGAAA 256 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| | || ||| | |||||||| |||||||| || || || | ||| Sbjct 255 CAATTGGAAGATGGACGTACACTCAGTGATTATAACATTCAAAAGGAGTCGACACTTCAT 196 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAAAA 124784 ||||| |||||| | || || || || ||| |||| | |||| Sbjct 195 TTGGTGTTACGTCTCCGCGGGGGGATGCAAATATTCGTGAAAA 153 >seq17817 Length=30685 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || ||| |||| || || || || || ||||| | ||| | | Sbjct 623 AATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAACCGAG 682 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| ||||| ||| || || || |||||||| || || || ||||| Sbjct 683 TGATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGATCA 742 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || |||||||| || |||||||| || || | || || | |||||||| Sbjct 743 ACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATTATAA 802 Query 124718 TATTCAAAAAG 124728 ||| ||||||| Sbjct 803 TATACAAAAAG 813 >seq24747 Length=879 Score = 96.9 bits (106), Expect = 5e-15 Identities = 90/113 (80%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 171871 TGTTTCTAATTCtttttttATTTTATATTCACCATGTTTTCTAATATTTGGTAAAACTTC 171930 |||||| | ||||||| | ||||||||||||||| ||| | ||| |||||||||| Sbjct 668 TGTTTCAAGTTCTTTTGTAATTTTATATTCACCAGTTTTACGAATTGAACGTAAAACTTC 609 Query 171931 ATTAGTTATCCATTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGATAAAA 171983 ||||| | ||||||||||||| |||||||| |||||||| || |||||| Sbjct 608 TTTAGTAACCCATTTTTTAAATTCTTTAGCTTTATATTTTTTATAT-ATAAAA 557 >seq14450 Length=5806 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | |||||| |||| || || || || ||| | || | ||| | Sbjct 5469 AATGCAAATTTTCGTTAAGACATTAACGGGAAAGACCATCACTTTGGAAGTGGAACCGTC 5410 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || ||| || || |||||||| || || || || ||||| Sbjct 5409 TGATACCATTGAGAATGTTAAGGCGAAGATACAGGATAAAGAGGGAATTCCCCCGGATCA 5350 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || ||||| || || |||||||| || || | || || | |||||||| Sbjct 5349 ACAGAGACTCATTTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTGAGTGATTATAA 5290 Query 124718 TATTCAAAAAG 124728 ||| ||||||| Sbjct 5289 TATACAAAAAG 5279 >seq13214 Length=6152 Score = 86.0 bits (94), Expect = 9e-12 Identities = 95/127 (75%), Gaps = 6/127 (5%) Strand=Plus/Plus Query 171867 TTAATGTTTCTAATTCtttttttATTTTATATTCACCATGTTTTCTAATATTTGGTAAAA 171926 ||| |||||| | ||||||| | | || ||||| ||| | ||| ||||||| Sbjct 31 TTATTGTTTCAAGTTCTTTTGTAACTT------CACCAGTTTTACGAATCAAAGGTAAAA 84 Query 171927 CTTCATTAGTTATCCATTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGATAAAATTA 171986 |||| ||||| | ||||||||||||| |||||||| |||||||||||||||||| Sbjct 85 CTTCTTTAGTAACCCATTTTTTAAATTCTTTAGCTTTATCCATTTTAGATGATAAAATTA 144 Query 171987 ATGAATA 171993 | ||||| Sbjct 145 AAGAATA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754129712003200