Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq21107 114 1e-20 seq32426 98.7 9e-16 seq68991 87.8 2e-12 >seq21107 Length=15695 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||||||||| | | ||| || | ||| | || || || |||||||| || || || Sbjct 15015 ACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGA 14956 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| || ||||| | |||||||| || |||| |||||||||||||| ||||| Sbjct 14955 GAGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGG 14896 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||| || ||| |||||| ||| || | ||||| ||| || | | || || Sbjct 14895 AATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCAC 14836 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | ||||| ||||| ||||| || || || |||||||| Sbjct 14835 CTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || ||||||| || ||||| |||||||| || |||||| || || || ||| Sbjct 13926 AAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCT 13867 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| |||||||| ||| | || | |||||||||||||| || || ||||| || ||| Sbjct 13866 TCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCT 13807 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 |||||| ||||| | || | ||| || | ||| || || | || | ||| Sbjct 13806 TGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTT 13747 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || || || ||||| Sbjct 13746 TTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 109 bits (120), Expect = 5e-19 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || ||||||| || ||||| ||||| || || |||||| || || || ||| Sbjct 14771 AAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCT 14712 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| ||||| || ||| | || | |||||||||||||| || || ||||| |||||| Sbjct 14711 TCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCT 14652 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTC---TCGACCTCGACGGTCACC 118703 |||||| || || | ||||| ||| || |||| || || || | || | Sbjct 14651 TGAATTTTGGCCTTTACATTTTCGATGGTATC---GCTCGGTTCAACTTCCAATGTAATG 14595 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||| ||||| || ||||| Sbjct 14594 GTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | || || ||||| |||| || |||||||| ||||| ||||||||||| Sbjct 14397 CCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14338 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||||| | ||||| || || | || | |||||||||||||| || Sbjct 14337 AGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGA 14278 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||| |||||| ||| || ||||| | ||||| || || | || ||| Sbjct 14277 ATTCCCTCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACC 14218 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || ||||| || || || || || || ||||| Sbjct 14217 TCCAATGTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | | | ||| || || |||| || |||||||| ||||| |||||||||| Sbjct 14171 TACCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGC 14112 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | | ||| || ||||| | |||||||| ||| | || || | ||| ||||| || | Sbjct 14111 TGAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGG 14052 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| || || ||| || ||||| | || | ||| || | | || | Sbjct 14051 GAATTCCCTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCA 13992 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||||||||| ||||| || || || |||||||| Sbjct 13991 CTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 >seq32426 Length=2656 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||| ||||||| || ||||| |||||||| || |||| | || || || ||| Sbjct 449 AACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCCATCT 508 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-C 118645 ||||| ||||| || | | |||| | ||||||||||||||||| || ||||| |||| | Sbjct 509 TCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTTGTCC 568 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| ||||| || || | ||||| ||| || | ||| || || | || | | Sbjct 569 TGT-ATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAACTTCCAATGTAATAGC 627 Query 118706 TTTGCCGGTCAGAGTTTT 118723 ||| ||||| || ||||| Sbjct 628 TTTACCGGTGAGTGTTTT 645 >seq68991 Length=328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 |||||||| || | ||| ||||| ||||||||||| ||||| || | || || ||| Sbjct 188 AACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTGAGTGTACGTCCATCT 247 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | ||||| || || |||| |||||||| ||||| || || || ||||| || ||| Sbjct 248 TCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATACCCTCTTTATCT 307 Query 118647 GTAATTTT 118654 |||||| Sbjct 308 TGAATTTT 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433087802878708