Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq54310 120 3e-22 seq21107 98.7 1e-15 seq17817 91.5 2e-13 seq14450 84.2 2e-11 >seq54310 Length=4878 Score = 120 bits (132), Expect = 3e-22 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 3089 GAAAAATATGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 3148 Query 60116 CTCACCACTATACTACCGAGGATTGAATA 60144 || |||||||||||||||||||||| ||| Sbjct 3149 CTGACCACTATACTACCGAGGATTGCATA 3177 >seq21107 Length=15695 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||||||||| ||||| | ||| || || | || || || || || || ||||| Sbjct 13906 CTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAA 13847 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||| |||| || | | ||| || | | ||| |||| | || | Sbjct 13846 AATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTAT-CTTGAATTTTGGCCTTAACAT 13788 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | || ||||||| || || || | || ||||||||||| || || ||||| | Sbjct 13787 TCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGA 13728 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 13727 CGAAGATTTGCAT 13715 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | |||||| || ||||| | || ||| || |||||||||||||| Sbjct 14169 CCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14110 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 |||||||| |||| || | || || || ||||| || |||| ||| || || | || Sbjct 14109 AGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGA 14050 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| || ||| ||| | || | || | || | | || ||| | |||||| Sbjct 14049 ATTCCCTCTTTATCC-TGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCAC 13991 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 13990 TTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| ||||| ||||| | ||| || || | || || || || || || ||||| Sbjct 14751 CTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAA 14692 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || | ||||||||| |||| || | | ||| ||||| ||| |||| | || | Sbjct 14691 AATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCT-TGAATTTTGGCCTTTACAT 14633 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||||||| ||| || || | || |||||||| || || || || || | Sbjct 14632 TTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGA 14573 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 14572 CAAAGATTTGCAT 14560 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | || | |||||||| | || ||| || |||||||| ||||| | Sbjct 13713 CCTCCCCTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAA 13654 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 |||||||| |||| || | || || || ||||| ||||||| ||| || || | || Sbjct 13653 AGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGA 13594 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || |||||| || || || | | | | ||| || || |||||| Sbjct 13593 ATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACT 13534 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | ||||| ||||| || |||| || || ||||||||||||||||| Sbjct 13533 TCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCATTTT 13484 >seq17817 Length=30685 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42996 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 43055 ||||| ||||| ||||| | |||||||| |||| || | || || || || || ||| Sbjct 811 TTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAATG 752 Query 43056 AGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 43115 |||| ||| || || | || | | || |||||| || || ||| | || | Sbjct 751 AGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCTCT 692 Query 43116 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 43175 | ||| || |||| ||| || || | || ||||| || ||||||| || || |||||| Sbjct 691 ATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAAAG 632 Query 43176 ATTTGCATTTTTA 43188 ||||||||||||| Sbjct 631 ATTTGCATTTTTA 619 >seq14450 Length=5806 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42996 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 43055 ||||| ||||| |||||| ||||||||| |||| || | || || || ||||| ||| Sbjct 5281 TTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAATG 5340 Query 43056 AGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 43115 |||| ||| || || | || | | ||| || ||| || || || | || | Sbjct 5341 AGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCTCA 5400 Query 43116 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 43175 | || || || |||||| || | |||||||| || ||||||| ||||| || || Sbjct 5401 ATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGAAA 5460 Query 43176 ATTTGCATTTT 43186 ||||||||||| Sbjct 5461 ATTTGCATTTT 5471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570813709873720