Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq21107 102 1e-16 seq3007 100 4e-16 seq918 98.7 1e-15 seq111006 91.5 2e-13 seq17817 87.8 3e-12 seq32426 86.0 9e-12 >seq21107 Length=15695 Score = 102 bits (112), Expect = 1e-16 Identities = 145/212 (68%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| || ||||| ||||||||||| |||||||| | | || || Sbjct 13695 ACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCC 13636 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 |||||||| || || || || | ||| || |||||||| ||||| |||||||| || || Sbjct 13635 AATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGT 13576 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||||| || ||| ||||| | ||||| |||||| Sbjct 13575 ATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTTA 13516 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || ||||||||||| | || ||||||||||| Sbjct 13515 CCGGTTAATGTTTTCACAAAGATTTGCATTTT 13484 Score = 100 bits (110), Expect = 4e-16 Identities = 89/109 (82%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 146080 AGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTC 146138 ||| ||||| ||| || |||||||| || || ||||| | || || ||||||||||||| Sbjct 14985 AGTCGATTCCTTTTGA-ATATTATAGTCCGAGAGAGTACGGCCGTCCTCTAATTGTTTTC 14927 Query 146139 CAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||| |||| | ||||||||||||||||| || ||||||||||| Sbjct 14926 CGGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCTTTATCTTG 14878 Score = 91.5 bits (100), Expect = 2e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTAT 146123 ||| || || || | ||| || || ||| || ||||||||||| || || || | | || Sbjct 13927 TAAGACTAAGTGGAGAGTCGACTCCTTTTGA-ATATTATAATCGGACAGTGTACGTCCAT 13869 Query 146124 CATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTAT 146183 | || | ||||||||| || |||||||||| |||||||| || ||||| || ||||||| Sbjct 13868 CTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTAT 13809 Query 146184 CTTG 146187 |||| Sbjct 13808 CTTG 13805 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | ||||||||| | ||| || ||||| ||||| ||||| Sbjct 14397 CCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14338 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | || || |||||||| || ||||||||||| | |||||||| || ||| Sbjct 14337 AGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGA 14278 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| ||||| Sbjct 14277 ATTCCCTCTTTGTCTTG 14261 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||| ||||| | ||| || ||||| ||||| ||||| ||||| | | || Sbjct 14154 AATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCC 14095 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || ||||||||||| || ||||| | ||| || |||||||| |||||||| |||||||| Sbjct 14094 TCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCC 14035 Query 146186 TG 146187 || Sbjct 14034 TG 14033 >seq3007 Length=6999 Score = 100 bits (110), Expect = 4e-16 Identities = 195/278 (70%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 10341 TCTGCAGGAATGGATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAA 10400 |||||||| |||||| | ||||||||||||||| ||| | ||| | ||| || Sbjct 6812 TCTGCAGGTTATGATTTATATTCTGCATATGATTATATAGTTCCGGCAATAGGAAAACAA 6753 Query 10401 TTAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCC 10460 | || | |||||| | || ||| | |||||||||||||||| |||| | || | | Sbjct 6752 ATGATTATGACTGATGTTTCAATTGAATTGCCTAAAGGATGTTATGGAAGAATTGCACAC 6693 Query 10461 AGATCT-GATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGA 10519 | ||| || ||| | || | ||||||||| | ||||||| |||||||| ||| Sbjct 6692 -GTTCTGGACTTA-CATGGAAGCACTTTATTGATGTCTGAGCTGGTGTAATTGATCTAGA 6635 Query 10520 TTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAA 10579 || | | || ||| | || ||||||||||| | || || |||||| ||| ||||| Sbjct 6634 TTTTCGGGGTAATTT--ATGTCATATTATTTAA-CTTTGGAA--AAGATTATATTATAAA 6580 Query 10580 -TAGAGGAGATAGAATATCTCAATTAATATGTGAAAAA 10616 || | | ||| | || | |||||||| ||||| ||| Sbjct 6579 GTAAAAG-GATCGCATTGCACAATTAATTTGTGAGAAA 6543 >seq918 Length=8345 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 176665 TATAAATAAAATTTAAAATTTCATTAGTTATTACAACATTTTTCTTATTAAATAACGGAA 176724 |||||||||||||||| || |||||||| || | || |||||| | | ||| | | || Sbjct 1614 TATAAATAAAATTTAATATATCATTAGTAATCAAAATATTTTTTTGTTCAAAAAGTGAAA 1673 Query 176725 ACCATATATCTTTAAACCAAGAACCTAGTTCTATATCATAATTATTATACGTTATAAAGG 176784 ||||||||||||||||||||| ||||| | || | ||||||||| | ||||| | Sbjct 1674 ACCATATATCTTTAAACCAAGTACCTAAATTAATTTGATAATTATTTTCATTTATATATT 1733 Query 176785 TTGATACATCCATTAATGTGTTAT 176808 ||| || ||||||| |||| Sbjct 1734 CAAATATATTTTTTAATGTTTTAT 1757 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 178089 ATATATAAAAGTGAGAATATCATTAGTTATTAACACATCTTTTTCTTCAAATAAAGGATA 178148 ||| |||||| | | ||||||||||| || || | || ||||| |||||| | | | | Sbjct 1615 ATAAATAAAATTTAATATATCATTAGTAATCAAAATATTTTTTTGTTCAAAAAGTGAAAA 1674 Query 178149 CCATATATCTTTAAACCAAGAACCTAACTTAA 178180 |||||||||||||||||||| |||||| |||| Sbjct 1675 CCATATATCTTTAAACCAAGTACCTAAATTAA 1706 >seq111006 Length=334 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/254 (69%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 10364 TGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAATTAT 10423 |||| |||||| ||| ||| | ||| | | ||| || | || | |||||| | || Sbjct 271 TGCAAATGATTCTATAGTTCCGGCAAAAGGAAAACAAATTATTATGACTGATGTTTCAAT 212 Query 10424 AGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCT-GATTTAGCTCTAAATA 10482 ||| | |||||||||||||| | |||| | || || | ||| || ||| | ||| Sbjct 211 TGAATTGCCTAAAGGATGTTACGGAAGAATTGCACCACGTTCTGGACTTACATGGAAA-C 153 Query 10483 AATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAA 10542 | ||||| ||| | ||| |||| |||||||| ||||| | | || ||| | | || | Sbjct 152 ACTTTATCGATGTCGGAACTGGTGTAATTGATTCAGATTTTCGGGGTAATTTATGTGTCA 93 Query 10543 TATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAAT 10602 ||||||| || | || |||||||| || ||||| | | ||| | || | |||| Sbjct 92 TATTATTCAACTTTGAAAAAGAAGATTTCATTATAAAGAAAAATGATCGTATTGCACAAT 33 Query 10603 TAATATGTGAAAAA 10616 | || ||||| ||| Sbjct 32 TGATTTGTGAGAAA 19 >seq17817 Length=30685 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 146095 TATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCT 146154 |||||||||||| |||||||| | | || || |||||||| || |||||||| | ||| Sbjct 806 TATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAATGAGTCT 747 Query 146155 TTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || |||||||| ||||| |||||||| || || Sbjct 746 CTGTTGATCCGGGGGAATCCCTTCTTTGTCCTG 714 >seq32426 Length=2656 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 146080 AGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTC 146138 ||| ||||| ||| || ||||| || || || ||||| | || || || |||||||||| Sbjct 236 AGTCGATTCCTTTTGA-ATATTGTAGTCCGAGAGAGTACGGCCGTCCTCCAATTGTTTTC 294 Query 146139 CAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||| |||| | || |||||||||||||| || ||||||||||| Sbjct 295 CGGCAAAGATCAGACGCTGTTGATCCGGAGGAATCCCCTCTTTATCTTG 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742221055758080