Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq21107 96.9 2e-15 seq17817 86.0 4e-12 >seq21107 Length=15695 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| || || || ||||| || || |||| ||||| || || || ||||| Sbjct 13677 TCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAG 13618 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| | ||| || || ||| | | || ||||| |||||| ||||| || Sbjct 13617 ATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATTT 13558 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| ||| | || ||| || |||| ||||| ||||| ||||| | ||||||||| Sbjct 13557 TCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACA 13498 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 13497 AAGATTTGCAT 13487 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| || ||||| ||| || || |||| ||||| || || || |||||| Sbjct 14133 TCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAA 14074 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || | ||| || || ||| | | ||| || || ||||| ||| | || Sbjct 14073 ATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGAATCTTGGCCTTAACATTC 14014 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||||| | ||| || |||| ||||||||||||||||||||||| || || Sbjct 14013 TCAATGGTATCGGAGGGTTCCACTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACG 13954 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 13953 AAGATCTGCATC 13942 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || ||||| | ||| ||| || || || || ||||| || Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || || || || || || || || || |||||||| || || Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| || || || ||| ||||| | | | || | ||| | | ||| || Sbjct 14894 ATCCCCTCTTTATCTTGAAT-TTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCAC 14836 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||||||||| ||||||||||| || || |||||||||||| Sbjct 14835 CTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCATC 14787 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || || || || |||||||| ||| | || || | || || || |||||| Sbjct 13905 TCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAA 13846 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | |||||||| ||| ||| | | ||| || || || || ||| | || Sbjct 13845 ATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCTTGAATTTTGGCCTTAACATTC 13786 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||| || || |||| || |||||||||||||||||||| || || Sbjct 13785 TCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACG 13726 Query 34379 AAGATCTGCATCGCTC 34394 ||||| |||||| ||| Sbjct 13725 AAGATTTGCATCCCTC 13710 >seq17817 Length=30685 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 |||| ||||| || || ||||| || || |||| ||||| || || || || |||| Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319 |||| | ||| || || ||| | | || ||||| |||||| |||| || Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCT 694 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 |||||| ||| ||| |||||| || | || ||||| || || || | |||||||||| Sbjct 693 CTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAA 634 Query 34380 AGATCTGCAT 34389 |||| ||||| Sbjct 633 AGATTTGCAT 624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322518990489440