Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq21474 116 3e-21 >seq21474 Length=6928 Score = 116 bits (128), Expect = 3e-21 Identities = 235/348 (68%), Gaps = 8/348 (2%) Strand=Plus/Minus Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 || |||||||| | | ||| | ||| || ||| |||| || || ||||| | || Sbjct 6059 CAGCCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTACA 6000 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 |||||||| || || | | || || | ||| || || ||||| | | ||| || | Sbjct 5999 CAGTTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTC 5940 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG----TG 16221 || |||||| | | ||| | | | | || || | |||||| ||| || Sbjct 5939 ACAGCTTCAGTAACAATACGAGTGATT----TGTTCGACCGTTGGTTTATTAACGATATG 5884 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 |||||| | || ||| || ||||||||||| | ||| || || | ||| | || || Sbjct 5883 TTTAAAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCATT 5824 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 || || | || ||||| ||||| ||||| || | ||||||||| | ||| ||||| Sbjct 5823 ACTGAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGA 5764 Query 16342 ACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTC 16389 ||| |||||||||||| ||||||| ||||| ||||| || || || Sbjct 5763 ACCGCTAAAGAATATACCCTCAACTGATGCAAACGCAACTAAACGTTC 5716 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 15917 TCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAA 15976 |||| |||||| ||||| || | ||||||||||| | |||||||| ||||||||| Sbjct 6494 TCTTCTTTATTGGACATTACACCACTCTTTTGATATTCGCCGACTCTCTTCTCAAAGAAA 6435 Query 15977 TTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 || ||||| || || |||||||| | |||||| ||||| |||||||| Sbjct 6434 TTCGTTTTCCCCTCCAATGAAATCTGTTCCATGAAATCGAAAGGATT 6388 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||| || || || | || |||||||||||| ||||| |||||||| ||||| || || Sbjct 5241 AATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTG 5182 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603 ||| || |||||||||| ||||| | | ||| |||||| Sbjct 5181 AAACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCA 5142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461700008151400