Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq21107 118 8e-22 >seq21107 Length=15695 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||| || ||||| || || |||||| ||||| || || ||| |||| || | || Sbjct 13927 TAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATC 13868 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || ||||||||||||||||| ||||| ||||| || ||||| || | |||||| || || Sbjct 13867 TTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATC 13808 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| |||||| | | | | | || | ||| || |||| ||||| || Sbjct 13807 TTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGT 13748 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||||||| || ||||||||||| Sbjct 13747 TTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||| || ||||| || || |||||| || || || || ||| |||| || | || Sbjct 14772 TAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATC 14713 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || |||||||| |||||||| ||||| ||||| || ||||| || | |||||| ||||| Sbjct 14712 TTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTC 14653 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| ||| || | | | | || | || || |||| ||||| || Sbjct 14652 TTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGT 14593 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || |||||||||||||| Sbjct 14592 TTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394398941014429