Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq21474 163 3e-35 >seq21474 Length=6928 Score = 163 bits (180), Expect = 3e-35 Identities = 216/296 (73%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 14073 CACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAG 14132 |||| |||||||| || ||| || |||| | || ||| ||||| || | ||| || | Sbjct 6001 CACAGTTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGG 5942 Query 14133 ACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAG----A 14188 |||||| || | | |||| || | | |||| || || | | | | ||| | Sbjct 5941 TCACAGCTTCAGTAACAATA--CG-AGTGATTTG-TTCGACCGTTGGTTTATTAACGATA 5886 Query 14189 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 14248 |||||||| | ||||||||| |||||||||||||| |||||||| | || ||||| Sbjct 5885 TGTTTAAAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCA 5826 Query 14249 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAAT 14308 || || || ||||| ||||| | ||| ||||| |||| ||||||||||| |||||| Sbjct 5825 TTACTGAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAAT 5766 Query 14309 GATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364 || ||| ||||||||| |||||||||| |||||||| | ||| ||||| |||| Sbjct 5765 GAACCGCTAAAGAATATACCCTCAACTGATGCAAACGCAACTAAACGTTCGGCAAA 5710 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 13886 TCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAG 13945 || ||||| || || || || || | ||||||||||| | ||||| || |||||||| Sbjct 6494 TCTTCTTTATTGGACATTACACCACTCTTTTGATATTCGCCGACTCTCTTCTCAAAGAAA 6435 Query 13946 TTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATA-AA 14004 || ||||| || |||| ||| || | |||||| ||||| || ||||| | || || || Sbjct 6434 TTCGTTTTCCCCTCCAATGAAATCTGTTCCATGAAATCGAAAGGATTCGACGAATTATAA 6375 Query 14005 CACTTTA 14011 |||||| Sbjct 6374 TACTTTA 6368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481498788035320