Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8365 641 5e-179 seq21474 147 3e-30 >seq8365 Length=5311 Score = 641 bits (710), Expect = 5e-179 Identities = 1531/2290 (67%), Gaps = 50/2290 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| | | | |||||||||||||| | ||||||||| ||||| |||| Sbjct 618 GTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAAC 677 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAG-TTTGGAATAACTCGGATCTGCTAT 62164 || | |||| |||| ||| ||||| || | |||| || | || |||| || Sbjct 678 CCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCATTG-TGGGTGCTGCGAT 736 Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 ||| || || | ||||| ||||| || ||||| || || | || |||| ||||| || Sbjct 737 ATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAAT 796 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284 | || |||| |||||||| | ||||| || | | ||| | ||| | |||| Sbjct 797 AACTGTACGCTGTGATATTTCCCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAAT 856 Query 62285 GTTTGTATTC---TGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 | || ||||| ||||| || || || |||||| | | |||||| Sbjct 857 TCCCTCAATCAATTGAATCGATCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATT 916 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| | || | || || ||| |||| | ||||| | ||||| | ||| |||||||| Sbjct 917 CCAAAGTTCACGTTCAGTCAAATCTCTCAAAAGATGATGATTAACGATTTGAAATTCTCC 976 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 ||||| ||||| || | || |||||||| ||||||| ||| || ||||| |||||||| Sbjct 977 GGACAAAACTCTTCGTGAATATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCC 1036 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 |||||| || || || ||||| |||||||| ||||| | ||| | ||| || || || || Sbjct 1037 CAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCC 1096 Query 62522 GTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANN 62581 || || |||| || || || || | ||||||||| || || | |||| | Sbjct 1097 GTGCATTTTGATCTTTTCCTTCAGTTCAGTCCAATTCCATAGGTCTGTCGGTGTCTTATT 1156 Query 62582 NNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGG 62641 ||| || || || || ||| |||| || || |||||| || || || Sbjct 1157 CCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTAAGG 1216 Query 62642 TCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAA 62701 || | || | || | || |||||||| || | || ||| |||| | || ||||| Sbjct 1217 ACCATACTGTTGTGCCAATTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTCAAA 1276 Query 62702 GATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAA 62761 || | |||| ||| || ||||| || || ||||| || ||| | |||||| || Sbjct 1277 TATTTGAATATTGAGACGTTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAATGAA 1336 Query 62762 CGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC 62821 ||| || |||||||| ||||| ||||| || || || | | || ||||| ||| ||| Sbjct 1337 CGCATCGGCTAATCCCTGAACTCCAATGCCAATCGGACGGTTCCTTTTATTGGAGCGTTC 1396 Query 62822 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 62881 | ||| |||| ||||||||||||||||| ||||| ||||| | |||| | ||| || Sbjct 1397 CGTTTCAGGAACGGGATAATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAATGAC 1456 Query 62882 TTTGACCACATCCTTCAG-TTTGAGAAAATCAAATCGCCCATCTATT-------ACAAAC 62933 ||| | |||||||| || |||| | || ||||| | | | || || ||| Sbjct 1457 TTTAGCGACATCCTTGAGCTTTGCG-AAGTCAAA-GGTGCGGGTTTTGGTGTCGACGAAC 1514 Query 62934 ATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGT 62993 || | ||| || || |||| |||||||||||| | || | | | | ||||| Sbjct 1515 CGATTGAGTGCGACTGAAGCCAAATTACACACGGCAATTTCGTCGGGAGATGAATATTCA 1574 Query 62994 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63053 | || |||||||| ||||| || || || ||||| | |||||||||||| |||| Sbjct 1575 ACGATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGACTTT 1634 Query 63054 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63113 ||| || || ||||||| ||| | || || || || || ||||||| || | | Sbjct 1635 CGGTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCGACA 1694 Query 63114 ATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTA 63172 || || | ||| | |||| ||||| | | ||||||| || ||||||||||||| Sbjct 1695 ATGGCATACCACAATGACT-GAGCCCGAACCTGACGTTTGTATTTCTTTTCTCTTTCGTA 1753 Query 63173 TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATC 63232 | ||| || || ||| | | ||||| | | || | || ||||| | Sbjct 1754 TTTCTCATATAAATCCTCAAACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTCGTG 1813 Query 63233 CGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGATCAGG 63289 ||||||||||| ||||| | ||| |||| ||| || |||||||| || | ||| || Sbjct 1814 TGGACACATCAATGACCA-TATCC--CATCGGATTCAACACGTTTCATGAACAAATCGGG 1870 Query 63290 AATCCAAAGAGCTATA-AATAGATCTCTTGTTC-TATGTTCCTCGTTTCCTGTATTCTTT 63347 ||||||||| || ||| || | || | || | ||| |||||| || || ||||| Sbjct 1871 AATCCAAAG-GCCATAGAACAAGTCACGTGCACGTAT-TTCCTCAGAACCCGTGTTCTTC 1928 Query 63348 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63407 |||| |||||||| | | | ||| | |||||||||||| | ||| | || | | | Sbjct 1929 CTAAGGTCGAGGAATTCGAATACATCGGCATGCCACGGTTCGATGTAAACTGCGAAAGCG 1988 Query 63408 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63467 || || |||||||| || |||||||| | ||||| || || || || | || | |||| Sbjct 1989 CCGGGACGTTTGTTCCCCCCCTGATCGACGTATCGGGCAGTATTGTTGAACACGCGCAAC 2048 Query 63468 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGA 63527 || || | | || |||||||| ||||| ||||| | ||||| || | || | Sbjct 2049 ATCGGGACCAATCCATTTGATATGCCATTCGTACCCGCAATATAAGTGCCCTTAGCCCTT 2108 Query 63528 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63587 || | || || || || || || || ||| || || | |||||| |||| Sbjct 2109 ATGCAATGAACATTTATTCCGATACCACCGGCAGCTTTCGATATGACAGCGCATTGTTTG 2168 Query 63588 AACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGAC 63647 | ||||| || || || || || || ||||| ||||| | | || ||||| || ||| Sbjct 2169 AGTGTGTCGTAAATCCCCTCAATACTGTCATCTTTCATGGTCAATAAGAAACAACTGGAC 2228 Query 63648 ATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63707 | ||| | | | |||||| ||||| || | || || || || || ||||||||| | Sbjct 2229 AATTGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCGGTGATGCATGAGTAAACCATCGT 2288 Query 63708 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63767 || || | ||||| ||||||||||| || | ||| || || | || || || || Sbjct 2289 TCGGACATGAGATTATACGTCTCAATGGCAGCGTCAATGTCATTTCCGTGTATCCCCACA 2348 Query 63768 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAG 63827 ||||||||||| | ||||||||| |||| ||| | | ||| | || || || | || Sbjct 2349 GCGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGACTTTCCTATTGATCTTAATTAAA 2408 Query 63828 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT-ATGAAAAGTCTCGTTCGTAAAT 63886 || || || | ||||| ||||| ||||| |||| |||| || || || || ||||| Sbjct 2409 TATGACCGCTCAAGTGTTTTGAAACCGAAATAATTGTAATGATAA-TCGCGATCATAAAT 2467 Query 63887 AATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACT----TG 63942 || | |||||||| || || || | || | ||| |||| || || Sbjct 2468 GATGGCGGAATTGAGTCGTTCGGCATTCTTTTCAATGA----CATCGTAAATCTCATCTG 2523 Query 63943 AAATAATCGGAGAATGTTT----CCCATT-TTTAGGATTAACATAGTTGA-ATAAATCCT 63996 |||| ||||| ||||| ||||| | | || |||| ||| | | |||| Sbjct 2524 AAATCATCGG----TGTTTTGAGACCATTACTCTCGTTTCTCATA--TGATAGAGATCCC 2577 Query 63997 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGG 64056 || || || ||| ||| |||||||| || |||| |||||| | || || | | Sbjct 2578 TAATGACATCGGAAAAGTTTTTCTTTGTTTCTTTATGTAAATTTGACACTGCAATACGTG 2637 Query 64057 CGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCA 64116 | || ||||| |||||||| | ||||| || || || || || ||||| || || | Sbjct 2638 CCGCGAGAATAGCATAATCGGCATGTTTCGTTGTCATTGTTGCGGCGATTTCCGCCGCTA 2697 Query 64117 GAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTA 64176 | | |||||||| || || || || || |||||| || || ||||||| | | Sbjct 2698 AATTATCCAATTCAACGGTCGTGACACCCGAATATATCCCGGCGATGACCTTCAATGTGA 2757 Query 64177 TTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACG 64236 || | ||| || | || | ||| || |||||||| | ||| || || || | Sbjct 2758 TTGACGGTGCATCGATGTAATTCATGTCCAAACCATAGCAGAGTTTCACGATTCGGGATG 2817 Query 64237 TGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTTTG 64296 ||||||| || ||||| || ||| || ||| | || |||||| ||| ||||||||| Sbjct 2818 TGATTTTGTCGAACATAACTGATTCTTTTCGTCCGTCTCTTTTAATTACATACATTTTTG 2877 Query 64297 TTGGTGTAAT 64306 |||| ||| Sbjct 2878 -CGGTGCAAT 2886 >seq21474 Length=6928 Score = 147 bits (162), Expect = 3e-30 Identities = 235/335 (70%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 ||||||||| | || | ||| ||||| |||| || |||| ||||||| | |||| Sbjct 6056 CCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTACACAG 5997 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || |||||| || ||||| || | || | ||| || |||||||||| || Sbjct 5996 TTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACA 5937 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA----ATGTTT 33571 || | || | |||| | | | ||| ||| || ||| | || ||| |||||| Sbjct 5936 GCTTCAGTAACAATA---CGAGTGATTTGTTCGACCGTTGGTT-TATTAACGATATGTTT 5881 Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 ||| | ||||| |||||||| || || || ||||| || | || | ||| ||| Sbjct 5880 AAAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACT 5821 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 || || | ||| ||||| || ||||| || || ||||||||||| || |||||||| || Sbjct 5820 GAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACC 5761 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 | |||||| || || || |||| ||||| |||| Sbjct 5760 GCTAAAGAATATACCCTCAACTGATGCAAACGCAA 5726 Score = 132 bits (146), Expect = 6e-26 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 33964 CTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 34023 ||||||| ||||| || ||||| ||||| || || ||||||||||| |||||| ||||| Sbjct 4578 CTAAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATAA 4519 Query 34024 AATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCCACT 34082 ||| ||| | || || ||| | | |||||| | ||||| | | ||||||| Sbjct 4518 AATGACGTTCAT-TGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCACT 4460 Query 34083 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATAT 34142 ||||| || |||||||| ||||||||||| || |||||||| |||| || || ||||| Sbjct 4459 TCTTCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATAC 4400 Query 34143 TGGATTGGGAAAATAACAAATC 34164 | || ||||| || || |||| Sbjct 4399 TCAATCGGGAACATTACGAATC 4378 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 33234 CTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATT 33290 ||| ||||||| |||| ||| ||| | || ||||||| | ||||| || || | Sbjct 6527 CTTCAAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATTGGACATTACACCACTC 6468 Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| ||||| || || | || || || ||||| ||||| || |||||||| || | | Sbjct 6467 TTTTGATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCCCTCCAATGAAATCTGT 6408 Query 33351 TCCATGAAATCAAACGGATT 33370 ||||||||||| || ||||| Sbjct 6407 TCCATGAAATCGAAAGGATT 6388 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 33848 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33907 || ||| || || ||||| |||||||||||||||||||| || || ||||| || || || Sbjct 5241 AATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTG 5182 Query 33908 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGC 33964 ||| ||||| || |||| || || |||| || ||||| | |||||||| || Sbjct 5181 AAACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCACGAACGAATCGTTCCGC 5125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628711884348720