Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq8365 390 1e-103 seq21474 150 2e-31 >seq8365 Length=5311 Score = 390 bits (432), Expect = 1e-103 Identities = 1230/1875 (66%), Gaps = 53/1875 (3%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| |||| ||||| || | ||| || | || ||| ||||| || || Sbjct 612 TCGACAGTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTC 671 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| ||||||| |||| |||| ||| ||||| || | ||||| ||| || Sbjct 672 TTTAACCCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCATTGTGGGTGCT 731 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | |||| || | | ||||| ||||| || || || || || | ||||| | |||| Sbjct 732 GCGATATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATT 791 Query 36970 TCTAAAA---TACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTA 37026 || | || ||| | | ||||| ||||| || ||||| || | || || | || Sbjct 792 TCAATAACTGTACGCTGT---GATATTTCCCATACTGTTTTGTACAGTTCCTTCAAATC- 847 Query 37027 TCTGGTAAAT---CTAAATG--TTGAATAGAACCATTATGTAACACAATTGTATTCTTTA 37081 |||| ||| || ||| |||||| || || | || | | ||| |||||| | Sbjct 848 -CTGGGGAATTCCCTCAATCAATTGAATCGATCCGTGATTAGAAATTATTTCATTCTTAA 906 Query 37082 TGTCATTATTCCACATATTTCTACTTATTAGT----TCTCTCAATAGGTGTGGATTTACA 37137 | || |||||| | ||| || | | ||| |||||||| || || |||| || Sbjct 907 GATTATCATTCCAAAG--TTC-ACGT-TCAGTCAAATCTCTCAAAAGATGATGATTAACG 962 Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 | ||||| ||||| || || ||||||| || ||||||||| || ||||| | ||||| Sbjct 963 ATTTGAAATTCTCCGGACAAAACTCTTCGTGAATATATATTACTCGTATACGCTTCAACA 1022 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||| ||||| | || || || | ||| ||||| || ||||| ||||||| | || Sbjct 1023 GACTCGTTATTTCCCAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCTAACAACAGA 1082 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317 || || || | ||| || | || || | | || |||||| |||||| ||||| ||| Sbjct 1083 CTGTTCCTGAGTCCGTGCATTTTGATCTTTTCCTTCAGTTCAGTCCAATTCCATAGGTCT 1142 Query 37318 GTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 || || |||| |||||| ||||| || || || |||||| || |||||| | | | Sbjct 1143 GTCGGTGTCTTATTCCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGAGAACCCTCA 1202 Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAA 37437 |||| ||| ||||| || || || || | ||| ||||| ||||| || || | || Sbjct 1203 TATGACTCGTAAGGACCATACTGTTGTGCCAATTCACAACTCGATTCGAGAGCCCCGAAA 1262 Query 37438 TATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAG 37497 |||| ||| || || ||||| ||||| | ||| ||||| || || || | || Sbjct 1263 TATAATGTCTCAAATATTTGAATATTGAGACGTTTCGCTTCGGGACTCTCAAACGGGTAA 1322 Query 37498 CCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTC 37557 | || | || ||| |||| || || |||||||| || || || || || | | | Sbjct 1323 CGCATGAGAATGAACGCATCGGCTAATCCCTGAACTCCAATGCCAATCGGACGGTTCCTT 1382 Query 37558 TTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGA 37617 ||||| || | || ||| || ||||||||||| ||||| || || ||||||| | Sbjct 1383 TTATTGGAGCGTTCCGTTTCAGGAACGGGATAATAATTAATATCGATAATCTTATTTA-A 1441 Query 37618 TTTTTAACTAGT-ATTTTCGTAATTATTC-TCAACTTGTCGAA--CATAAATACG----T 37669 ||| || | | ||| | | || | | | ||| |||| || | | || | Sbjct 1442 GTTTCGGGTAATGACTTTAGCGA-CATCCTTGAGCTTTGCGAAGTCAAAGGTGCGGGTTT 1500 Query 37670 TATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTT 37729 | | | || || | | | | | || | | |||||| || |||| ||| || Sbjct 1501 TGGTGTCGACGAACCGATTGAGTGCGACTGAAGCCAAATTACACACGGCAATTTCGTC-G 1559 Query 37730 CGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTG 37788 | | || ||| | || || || || ||||| || |||| ||||| | ||| Sbjct 1560 GGAGATGAATATTCAACGATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTT 1619 Query 37789 CTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCT 37848 ||||||||| ||| || ||| |||||||| | || ||||| || || || Sbjct 1620 TGTTGATTGGACTTTCGGTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCG 1679 Query 37849 ATTTGAGCCTCGATAATAGATTTCCATAA--ACTTCTTGCTTTAAC--GATCGCTTTAAt 37904 || |||||||||| ||| | | ||| || ||| || ||| || || || || Sbjct 1680 ATCTGAGCCTCGACAATGGCATACCACAATGACT--GAGCCCGAACCTGA-CGTTTGTAT 1736 Query 37905 ttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCA 37964 || ||| | | ||||||||| |||||| | | ||| | | ||||| || Sbjct 1737 TTCTTT-TCTCTTTCGTATTTCTCATATAAATCCTCAAACGCCTGACCCCACGTGTCATG 1795 Query 37965 TAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTC 38024 ||| || || |||||| ||||||||| | |||||| |||| ||| || |||| Sbjct 1796 TAAACCCGGGCATTCGTGTGGACACATCAATGACCATATCCCATCGGATTCAACACGTTT 1855 Query 38025 CATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATC-TTTGGTTCTATATTCTTCG 38082 ||| || ||||| || | ||| || || || || || || || ||| ||| || Sbjct 1856 CATGAACAAATCGGGAATCCA-AAGGCCATAGAACAAGTCACGTGCACGTAT-TTCCTCA 1913 Query 38083 TTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATA 38142 || ||||| || | | || || ||||||| ||| || ||||| ||||| || Sbjct 1914 GAACCCGTGTTCTTCCTAAGGTCGAGGAATTCGAATACATCGGCATGCCACGGTTCGATG 1973 Query 38143 TAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTA 38202 |||| | | || || || | ||| | || ||||||| | |||| | || || Sbjct 1974 TAAACTGCGAAAGCGCCGGGACGTTTGTTCCCCCCCTGATCGACGTATCGGGCAGTATTG 2033 Query 38203 TTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAA 38262 || | | | ||||| || || | ||||| ||| |||| || |||| | |||||| Sbjct 2034 TTGAACACGCGCAACATCGGGACCAATCCATTTGATATGCCATTCGTACCCGCAATATAA 2093 Query 38263 GTACCCTTAGCTCGTAT---AT-TACTTATCGACAATCCTATTCCACCTGCATGTTTTGA 38318 || |||||||| | ||| || || | | | ||| || ||||| ||| ||| || Sbjct 2094 GTGCCCTTAGCCCTTATGCAATGAACATTT----ATTCCGATACCACCGGCAGCTTTCGA 2149 Query 38319 TATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGG 38378 ||| | |||||||||||| | || || | || || || ||||||||||| || || | Sbjct 2150 TATGACAGCGCATTGTTTGAGTGTGTCGTAAATCCCCTCAATACTGTCATCTTTCATGGT 2209 Query 38379 TAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGA 38438 | || |||||||| |||| ||| || ||||||||||| || || | ||| || || Sbjct 2210 CAATAAGAAACAACTGGACAATTGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCGGTGA 2269 Query 38439 TGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATC 38498 |||||| | |||||| ||| |||| |||||| || || || || | || || || Sbjct 2270 TGCATGAGTAAACCATCGTTCGGACATGAGATTATACGTCTCAATGGCAGCGTCAATGTC 2329 Query 38499 ACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT 38558 | ||||| || || | || || | ||| ||||| || || |||| ||| | ||| Sbjct 2330 ATTTCCGTGTATCCCCACAGCGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGACTTT 2389 Query 38559 ATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGA 38618 |||| |||| || ||| || || | |||||| | || |||||| | || Sbjct 2390 CCTATTGATCTTAATTAAATATGACCGCTCAAGTGTTTTGAAACCGAAATAATTGTAATG 2449 Query 38619 ATAATCTCTATCGTA 38633 |||||| | ||| || Sbjct 2450 ATAATCGCGATCATA 2464 >seq21474 Length=6928 Score = 150 bits (166), Expect = 2e-31 Identities = 247/351 (70%), Gaps = 4/351 (1%) Strand=Plus/Minus Query 11429 AAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGA 11488 || || ||| ||| || || || | | ||| | ||| ||||| |||| || || ||| Sbjct 6071 AATACCTTTGGACAGCCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTA-TGA 6013 Query 11489 GA-CATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547 ||| | ||| |||||||| || || | ||||||| ||| | ||||||||||| Sbjct 6012 CTTCATCAGTACACAGTTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTC 5953 Query 11548 CTTTTCTATATTAACCGCATCAATGATTAT-CGACGTTATAACTTCCTTAGATGGTGGAT 11606 || ||| || | || || ||| | | || ||| || || ||| | |||| || Sbjct 5952 CTGTTCAATGGTCACAGCTTCAGTAACAATACGA-GTGATTTGTTCGACCGTTGGTTTAT 5894 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 | | ||||||||| | ||||||||| ||||||||||| | || || || | || Sbjct 5893 TAACGATATGTTTAAAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATA 5834 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | ||||||||| || || ||||| ||||| | ||| ||||| |||| ||||||||| | Sbjct 5833 TCAGTTCATTACTGAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTG 5774 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTA 11777 || |||||||| ||||||||| ||||| || | |||||| || |||| Sbjct 5773 AGGCGAATGAACCGCTAAAGAATATACCCTCAACTGATGCAAACGCAACTA 5723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467702252004560