Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8365 650 0.0 seq21474 138 1e-27 >seq8365 Length=5311 Score = 650 bits (720), Expect = 0.0 Identities = 1528/2283 (67%), Gaps = 55/2283 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| | | | |||||||||||||| | ||||||||| ||||| |||| Sbjct 618 GTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAAC 677 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAG-TTTGGAATAACTCGGATCTGCTAT 64957 || | |||| |||| ||| ||||| || | |||| || | || |||| || Sbjct 678 CCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCATTG-TGGGTGCTGCGAT 736 Query 64958 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017 ||| || || | ||||| ||||| || ||||| || || | || |||| ||||| || Sbjct 737 ATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAAT 796 Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 65077 | || |||| |||||||| | ||||| || | | ||| | ||| | |||| Sbjct 797 AACTGTACGCTGTGATATTTCCCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAAT 856 Query 65078 GTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 | || ||||| ||||| || | || || |||||| | | |||||| Sbjct 857 TCCCTCAATCAATTGAATCGATCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATT 916 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||| | || | || || ||| |||| | ||||| ||||||| | |||||||||||| Sbjct 917 CCAAAGTTCACGTTCAGTCAAATCTCTCAAAAGATGATGATTAACGATTTGAAATTCTCC 976 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 ||||| ||||| || | || |||||||| ||||||| ||| |||||||| |||||||| Sbjct 977 GGACAAAACTCTTCGTGAATATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCC 1036 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 |||||| || || || ||||| |||||||| ||||| | ||| | ||| || || || || Sbjct 1037 CAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCC 1096 Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGTTC---CCAATTCCAAAGATCCGACGGTACAAC 65371 || || |||| || || || || ||| ||||||||| || || | |||| Sbjct 1097 GTGCATTTTGATCTTTTCCTTCAG---TTCAGTCCAATTCCATAGGTCTGTCGGTGTCTT 1153 Query 65372 NNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 65431 || || || || ||| |||| || || |||||| ||||| Sbjct 1154 ATTCCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTA 1213 Query 65432 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491 || || | || | || | ||||||||||| || | || ||| |||| | || || Sbjct 1214 AGGACCATACTGTTGTGCCAATTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTC 1273 Query 65492 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 65551 || || | |||| ||| || ||||| | || ||||| || ||| | |||||| Sbjct 1274 AAATATTTGAATATTGAGACGTTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAAT 1333 Query 65552 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 65611 ||||| || |||||||| ||||| ||||| || || || | | || ||||| ||| Sbjct 1334 GAACGCATCGGCTAATCCCTGAACTCCAATGCCAATCGGACGGTTCCTTTTATTGGAGCG 1393 Query 65612 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 65671 ||| | ||| |||| ||||||||||||||||| ||||| ||||| | |||| | ||| Sbjct 1394 TTCCGTTTCAGGAACGGGATAATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAAT 1453 Query 65672 TACTTTGACCACATCCTTCAG-TTTGAGAAAATCAAATCGCTCATCTATT-------ACA 65723 ||||| | |||||||| || |||| ||| ||||| | | | || || Sbjct 1454 GACTTTAGCGACATCCTTGAGCTTTGCGAAG-TCAAAG-GTGCGGGTTTTGGTGTCGACG 1511 Query 65724 AACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATAT 65783 ||| || | ||| || || |||| |||||| ||||| | || | | | | |||| Sbjct 1512 AACCGATTGAGTGCGACTGAAGCCAAATTACACACGGCAATTTCGTCGGGAGATGAATAT 1571 Query 65784 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 65843 | | || |||||||| ||||| || || |||||||| | |||||||||||| | Sbjct 1572 TCAACGATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGAC 1631 Query 65844 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 65903 ||| ||| || || ||||||| ||| | || || || || || ||||||| || Sbjct 1632 TTTCGGTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCG 1691 Query 65904 ATAATCGCTTTCCAGAC-GACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTC 65962 | ||| || | ||| | |||| ||||| | | ||||||| ||||||||||||| Sbjct 1692 ACAATGGCATACCACAATGACT-GAGCCCGAACCTGACGTTTGTATTTCTTTTCTCTTTC 1750 Query 65963 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 66022 |||| ||| || || ||| | | ||||| | | || || || ||||| Sbjct 1751 GTATTTCTCATATAAATCCTCAAACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTC 1810 Query 66023 ATCCGGACACATCAACGACCACTCTCCGTCATCC--TTCA-CTCGTTTCATAAAGAGATC 66079 | ||||||||||| ||||| | ||| |||| |||| | |||||||| || | ||| Sbjct 1811 GTGTGGACACATCAATGACCA-TATCC--CATCGGATTCAACACGTTTCATGAACAAATC 1867 Query 66080 AGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTC-TATGTTCCTCGTTTCCTGTATTC 66137 ||||||||||| || ||| || || || | | | ||| |||||| || || ||| Sbjct 1868 GGGAATCCAAAG-GCCATAGAACAAGTCACGTGCACGTAT-TTCCTCAGAACCCGTGTTC 1925 Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197 || |||| |||||||| | | | ||| |||||||||||| | ||| | || | | Sbjct 1926 TTCCTAAGGTCGAGGAATTCGAATACATCGGCATGCCACGGTTCGATGTAAACTGCGAAA 1985 Query 66198 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 | || || |||||||| || |||||||| | ||||| || || || || | || | | Sbjct 1986 GCGCCGGGACGTTTGTTCCCCCCCTGATCGACGTATCGGGCAGTATTGTTGAACACGCGC 2045 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 ||||| || | | ||||| ||| | ||||| || || | ||||| | || | || Sbjct 2046 AACATCGGGACCAATCCATTTGATATGCCATTCGTACCCGCAATATAAGTGCCCTTAGCC 2105 Query 66318 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 66377 | || | || || || || || || || ||| || || | |||||| || Sbjct 2106 CTTATGCAATGAACATTTATTCCGATACCACCGGCAGCTTTCGATATGACAGCGCATTGT 2165 Query 66378 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 || | || || || || ||||| ||||| ||||| ||||| | | || ||||| || Sbjct 2166 TTGAGTGTGTCGTAAATCCCCTCAATACTGTCATCTTTCATGGTCAATAAGAAACAACTG 2225 Query 66438 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 66497 |||| ||| | | |||||| ||||| || | || || || || || ||||||||| Sbjct 2226 GACAATTGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCGGTGATGCATGAGTAAACCAT 2285 Query 66498 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCT 66557 ||| || | ||||| ||||||||||| || | ||| || || | || || || Sbjct 2286 CGTTCGGACATGAGATTATACGTCTCAATGGCAGCGTCAATGTCATTTCCGTGTATCCCC 2345 Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 66617 || ||||||||||| | ||||||||| |||| ||| ||| || | || || || | Sbjct 2346 ACAGCGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGACTTTCCTATTGATCTTAATT 2405 Query 66618 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT-ATGAAAAGTCTCGTTCGTA 66676 || || || || | ||||| ||||| ||||| |||| |||| || || || || || Sbjct 2406 AAATATGACCGCTCAAGTGTTTTGAAACCGAAATAATTGTAATGATAA-TCGCGATCATA 2464 Query 66677 AATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT--- 66733 ||| || | || |||||| || || || | || ||||| |||| || Sbjct 2465 AATGATGGCGGAATTGAGTCGTTCGGCATTCTTTTCAATGACATC----GTAAATCTCAT 2520 Query 66734 -TGAAATAATCGGAGAATGTTT----CCCATT-TTTAGGATTGACATAGTTGA-ATAAAT 66786 |||||| ||||| ||||| ||||| | | || |||| ||| | | || Sbjct 2521 CTGAAATCATCGG----TGTTTTGAGACCATTACTCTCGTTTCTCATA--TGATAGAGAT 2574 Query 66787 CCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTC 66846 || || || || ||| ||| ||||||||||| |||| |||||| || || || | Sbjct 2575 CCCTAATGACATCGGAAAAGTTTTTCTTTGTTTCTTTATGTAAATTTGACACTGCAATAC 2634 Query 66847 TAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTG 66906 || || | ||| |||||||| | ||||| || || || || || ||||| || | Sbjct 2635 GTGCCGCGAGAATAGCATAATCGGCATGTTTCGTTGTCATTGTTGCGGCGATTTCCGCCG 2694 Query 66907 CCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 66966 | | | | |||||||| || || || || || |||||| || ||| ||||||| | Sbjct 2695 CTAAATTATCCAATTCAACGGTCGTGACACCCGAATATATCCCGGCGATGACCTTCAATG 2754 Query 66967 CTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAG 67026 ||| | ||| || | || ||| || ||||| || | ||| || || | Sbjct 2755 TGATTGACGGTGCATCGATGTAATTCATGTCCAAACCATAGCAGAGTTTCACGATTCGGG 2814 Query 67027 ATGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTT 67086 |||||||||| || ||||| || ||| || ||| | || |||||| ||| |||||| Sbjct 2815 ATGTGATTTTGTCGAACATAACTGATTCTTTTCGTCCGTCTCTTTTAATTACATACATTT 2874 Query 67087 TTG 67089 ||| Sbjct 2875 TTG 2877 >seq21474 Length=6928 Score = 138 bits (152), Expect = 1e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 36540 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 36599 ||||||| ||||| || ||||||||||| || || ||||||||||| |||||| ||||| Sbjct 4578 CTAAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATAA 4519 Query 36600 AATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTT 36659 ||| ||| || | ||| | | |||||| | ||||| | | |||||||| Sbjct 4518 AATGACGTTCATTGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCACTT 4459 Query 36660 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 36719 |||| || |||||||| ||||||||||| || |||||||| |||| || || ||||| | Sbjct 4458 CTTCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATACT 4399 Query 36720 GAATTGGAAAAATAACAAATC 36740 ||| || || || || |||| Sbjct 4398 CAATCGGGAACATTACGAATC 4378 Score = 129 bits (142), Expect = 8e-25 Identities = 227/331 (69%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 ||||||||| | || | ||| |||||| |||| || |||| ||||||| | |||| Sbjct 6056 CCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTACACAG 5997 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 ||||| || || ||| || ||||| || | || | ||| || |||||||| | || Sbjct 5996 TTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACA 5937 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 36151 || || || | |||| | | | ||| | | ||| || | | ||||||||| Sbjct 5936 GCTTCAGTAACAATACGAGTGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTAAAG 5877 Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 | ||||| |||||||| || || || ||||| || | || | ||| || || Sbjct 5876 AGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACTGAAG 5817 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 36271 || | ||| ||||| || ||||| || || ||||||||||| || || ||||| || | Sbjct 5816 GTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTA 5757 Query 36272 AAGAAAATTCCTTCTACTGCCGCAAAGGCAA 36302 ||||| || || || |||| ||||| |||| Sbjct 5756 AAGAATATACCCTCAACTGATGCAAACGCAA 5726 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 36424 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 36483 || ||| || |||||||| |||||||||||||||||||| || || ||||| || ||||| Sbjct 5241 AATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTG 5182 Query 36484 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGC 36540 ||| ||||| || |||| || || |||| || ||||| | |||||||| || Sbjct 5181 AAACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCACGAACGAATCGTTCCGC 5125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657017303605160