Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq21107 111 2e-19 seq32426 93.3 4e-14 seq8365 93.3 4e-14 seq68991 91.5 1e-13 >seq21107 Length=15695 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||| | || ||||| |||||||| ||||||||| | Sbjct 13941 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGAC 13882 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | |||||||| ||||| || || | |||| || ||||||||||| || Sbjct 13881 AGTGTACGTCCA-TCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGG 13823 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || || ||||| || ||| |||| | ||| | | || | || ||| | ||||| | Sbjct 13822 AATACCCTCTTTATC-TTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAA 13764 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || |||||||| | || || ||||| |||||||| Sbjct 13763 CTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 105 bits (116), Expect = 7e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||| | || ||||| ||||| || ||||||||| | Sbjct 14786 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGAC 14727 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | |||||||| ||||| || || | |||| || ||||||||||| || Sbjct 14726 AGTGTACGTCCA-TCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGG 14668 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || |||||||| ||| |||| | |||| | ||| | || ||| | || || | Sbjct 14667 AATACCCTCTTTGTC-TTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAA 14609 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || || ||||| | ||||| || || |||||||| Sbjct 14608 CTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || || || | || |||||||| ||||| || |||||||| | || | | Sbjct 14385 CGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCG 14326 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || | ||||| || ||| | |||| || ||||||||||| || || || |||||| Sbjct 14325 TCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTG 14266 Query 139670 TCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | || || | || |||||||| | || | Sbjct 14265 TC-TTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGAT 14207 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| ||||| | || || ||||| ||||||||| || Sbjct 14206 GGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCATACCT 14167 >seq32426 Length=2656 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| || || || |||||||| || || || Sbjct 207 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAG 266 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || | ||||| || ||| |||||||||| || ||||| ||||| Sbjct 267 AGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 326 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || || ||||| || ||| |||| | ||| | | || || |||| | ||| ||||| Sbjct 327 ATCCCCTCTTTATCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCAC 385 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || |||||| | | ||||| |||||||||||||| Sbjct 386 TTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || |||||||| | || ||||| |||||||| ||||||| | | Sbjct 434 CCCCCGCGGAGACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGAC 493 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | |||||||| ||||| || | |||||| || |||||||||||||| Sbjct 494 AGTGTACGTCCA-TCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGG 552 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||||| |||| | ||| | || ||| | ||||| || Sbjct 553 AATACCCTCTTTGTCCTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAAC 612 Query 139717 CTC 139719 || Sbjct 613 TTC 615 >seq8365 Length=5311 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 152719 CGACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCT 152778 |||| || ||||| | ||| ||||| || |||||| ||||||||||| ||||||| Sbjct 613 CGACAGTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCT 672 Query 152779 TGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGG 152838 | | || || |||||||| | ||||| ||| | ||||| |||| || || | | Sbjct 673 TTAACCCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCATTGTGGGTGCTG 732 Query 152839 CCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGT 152898 | || | | ||||| |||||| ||||| ||||| || || || | ||| || | ||| | Sbjct 733 CGATATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATTT 792 Query 152899 CGAT 152902 | || Sbjct 793 CAAT 796 >seq68991 Length=328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || || || |||| || ||||| ||||||||||||||||| || Sbjct 173 CCCCCGCGGAGACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTG 232 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| | ||||| || ||| |||||||||| || ||||| || || Sbjct 233 AGTGTACGTCCA-TCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGG 291 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || || ||||| || ||| |||| | ||| Sbjct 292 AATACCCTCTTTATC-TTGAATTTTAGCTTT 321 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||| || ||| |||||||||| || ||||| || || || ||||||||| Sbjct 17 TCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTTG 76 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||| ||| | | ||| | || |||| ||| || || || | || | Sbjct 77 TCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAATG 136 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||| | ||||| |||||||||||||| Sbjct 137 GTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495193103840800