Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8365 655 0.0 seq21474 141 1e-28 >seq8365 Length=5311 Score = 655 bits (726), Expect = 0.0 Identities = 1532/2286 (67%), Gaps = 50/2286 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||| | | | |||||||||||||| | ||||||||| ||||| |||| Sbjct 618 GTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAAC 677 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAG-TTTGGAATAACTCGGATCTGCTAT 78836 || | |||| |||| || ||||| || | |||| || | || |||| || Sbjct 678 CCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCATTG-TGGGTGCTGCGAT 736 Query 78837 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896 ||| || || | ||||| ||||| || ||||| || || | || |||| ||||| || Sbjct 737 ATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAAT 796 Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 78956 | || |||| |||||||| | ||||| || | | ||| | ||| | |||| Sbjct 797 AACTGTACGCTGTGATATTTCCCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAAT 856 Query 78957 GTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 | || ||||| ||||| || | || || |||||| | | ||||| Sbjct 857 TCCCTCAATCAATTGAATCGATCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATT 916 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| | || | || || ||| |||| | ||||| ||||||| | |||||||||||| Sbjct 917 CCAAAGTTCACGTTCAGTCAAATCTCTCAAAAGATGATGATTAACGATTTGAAATTCTCC 976 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 ||||| ||||| || | || |||||||| ||||| | ||| || || || |||||||| Sbjct 977 GGACAAAACTCTTCGTGAATATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCC 1036 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 |||||| || || || |||||||| ||||| ||||| | ||| | ||| || || || || Sbjct 1037 CAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCC 1096 Query 79194 GTATGATCTGATTTTATCTTTTAGAGATTC---CCAATCCCAAAGATCAGACGGGACAAC 79250 || | |||| || || || || ||| ||||| ||| || || | ||| Sbjct 1097 GTGCATTTTGATCTTTTCCTTCAG---TTCAGTCCAATTCCATAGGTCTGTCGGTGTCTT 1153 Query 79251 ATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATA 79310 |||||| | ||||| || || || || ||| ||| || || |||| || || Sbjct 1154 ATTCCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTA 1213 Query 79311 AGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTC 79370 ||| || | || || || ||||||||||||| || | || ||| |||| | || || Sbjct 1214 AGGACCATACTGTTGTGCCAATTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTC 1273 Query 79371 GAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAAT 79430 || || | |||||||| || ||||| | || ||||| || ||| | |||||| Sbjct 1274 AAATATTTGAATATTGAGACGTTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAAT 1333 Query 79431 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAAT 79490 ||||| || |||||||| ||||| ||||| || || || | | || ||||| || Sbjct 1334 GAACGCATCGGCTAATCCCTGAACTCCAATGCCAATCGGACGGTTCCTTTTATTGGAGCG 1393 Query 79491 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTAT 79550 ||| | ||| |||| ||||||||||||||||| ||||| ||||| | || | | || Sbjct 1394 TTCCGTTTCAGGAACGGGATAATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAAT 1453 Query 79551 TACTTTGACCACATCCTTTAG-TTTGAGAAAATCAAATCGTCCATCTATT-------ACA 79602 ||||| | |||||||| || |||| | || ||||| || | | || || Sbjct 1454 GACTTTAGCGACATCCTTGAGCTTTGCG-AAGTCAAA-GGTGCGGGTTTTGGTGTCGACG 1511 Query 79603 AACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATAT 79662 ||| || | ||||| || |||| |||||| ||||| | || | | | | |||| Sbjct 1512 AACCGATTGAGTGCGACTGAAGCCAAATTACACACGGCAATTTCGTCGGGAGATGAATAT 1571 Query 79663 TGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTC 79722 | | ||||||||||| || || || ||||||||||| | |||||||||||| | Sbjct 1572 TCAACGATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGAC 1631 Query 79723 TTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCT 79782 ||| ||| || || ||||||| ||| |||| || || || || ||||||| || Sbjct 1632 TTTCGGTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCG 1691 Query 79783 ATAATCGCTTTCCA-GACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTC 79841 | ||| || | ||| | |||| ||||| | | |||||| ||||||||||||| Sbjct 1692 ACAATGGCATACCACAATGACT-GAGCCCGAACCTGACGTTTGTATTTCTTTTCTCTTTC 1750 Query 79842 GTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTC 79901 ||||| |||||| || ||| | | ||||| || | ||| || || ||||| Sbjct 1751 GTATTTCTCATATAAATCCTCAAACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTC 1810 Query 79902 GTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGG 79961 || ||||||||||| ||||| ||||| | || |||||||| || | ||| || Sbjct 1811 GTGTGGACACATCAATGACCATATCCCATCGGATTCAACACGTTTCATGAACAAATCGGG 1870 Query 79962 AATCCAAAGAGCTATA-AATAGATCTC-TGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 80019 ||||||||| || ||| || | || | || ||| ||||| || || ||||| Sbjct 1871 AATCCAAAG-GCCATAGAACAAGTCACGTGCACGTAT-TTCCTCAGAACCCGTGTTCTTC 1928 Query 80020 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 80079 |||| |||||||| | | | ||| | |||||||||||| | ||| | || | | | Sbjct 1929 CTAAGGTCGAGGAATTCGAATACATCGGCATGCCACGGTTCGATGTAAACTGCGAAAGCG 1988 Query 80080 CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 80139 || || |||||||| || |||||||| | ||||| || || || || | || | |||| Sbjct 1989 CCGGGACGTTTGTTCCCCCCCTGATCGACGTATCGGGCAGTATTGTTGAACACGCGCAAC 2048 Query 80140 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199 || || | | ||||| ||| | ||||| || || | ||||| | || | || | Sbjct 2049 ATCGGGACCAATCCATTTGATATGCCATTCGTACCCGCAATATAAGTGCCCTTAGCCCTT 2108 Query 80200 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 80259 || | || || || || || || || ||| || || | |||||| |||| Sbjct 2109 ATGCAATGAACATTTATTCCGATACCACCGGCAGCTTTCGATATGACAGCGCATTGTTTG 2168 Query 80260 AACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGAC 80319 | || || || || ||||| || || ||||| ||||| | | || ||||| || ||| Sbjct 2169 AGTGTGTCGTAAATCCCCTCAATACTGTCATCTTTCATGGTCAATAAGAAACAACTGGAC 2228 Query 80320 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 80379 | ||| | | |||||| ||||| || | || || || || || ||||||||| | Sbjct 2229 AATTGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCGGTGATGCATGAGTAAACCATCGT 2288 Query 80380 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACC 80439 || |||| ||||| ||||||||||| || | || || || | || || || || Sbjct 2289 TCGGACATGAGATTATACGTCTCAATGGCAGCGTCAATGTCATTTCCGTGTATCCCCACA 2348 Query 80440 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 80499 ||||||||||| | ||||||||| |||| ||| ||| || |||| || || | || Sbjct 2349 GCGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGACTTTCCTATTGATCTTAATTAAA 2408 Query 80500 TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT-ATGAAAAGTCTCGTTCGTAAAT 80558 || || || | ||||| ||||| ||||| |||| |||| || || || || ||||| Sbjct 2409 TATGACCGCTCAAGTGTTTTGAAACCGAAATAATTGTAATGATAA-TCGCGATCATAAAT 2467 Query 80559 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACT----TG 80614 || | || |||||| || || || | || ||||| || | || || Sbjct 2468 GATGGCGGAATTGAGTCGTTCGGCATTCTTTTCAATGACATC----GTAAATCTCATCTG 2523 Query 80615 AAATAATCGGAGAATGTTT----CCCATT-TTTAGGATTAACATAGTTGA-ATAAATCCT 80668 |||| ||||| ||||| ||||| | | || |||| ||| | | |||| Sbjct 2524 AAATCATCGG----TGTTTTGAGACCATTACTCTCGTTTCTCATA--TGATAGAGATCCC 2577 Query 80669 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGG 80728 || || || ||| ||| |||||||| || |||| |||||| || || || | | Sbjct 2578 TAATGACATCGGAAAAGTTTTTCTTTGTTTCTTTATGTAAATTTGACACTGCAATACGTG 2637 Query 80729 CGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCA 80788 | || | ||| |||||||| | ||||| || || || || || ||||| || || | Sbjct 2638 CCGCGAGAATAGCATAATCGGCATGTTTCGTTGTCATTGTTGCGGCGATTTCCGCCGCTA 2697 Query 80789 GAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTA 80848 | | |||||||| || || || || || |||||| || ||| ||||||| | | Sbjct 2698 AATTATCCAATTCAACGGTCGTGACACCCGAATATATCCCGGCGATGACCTTCAATGTGA 2757 Query 80849 TTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACG 80908 || | ||| || | || ||| || ||||| || | ||| || || || | Sbjct 2758 TTGACGGTGCATCGATGTAATTCATGTCCAAACCATAGCAGAGTTTCACGATTCGGGATG 2817 Query 80909 TGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTTTG 80968 ||||||| || ||||| || ||| || ||| | || |||||| ||| ||||||||| Sbjct 2818 TGATTTTGTCGAACATAACTGATTCTTTTCGTCCGTCTCTTTTAATTACATACATTTTTG 2877 Query 80969 TCGGTG 80974 ||||| Sbjct 2878 -CGGTG 2882 >seq21474 Length=6928 Score = 141 bits (156), Expect = 1e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 50342 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 50401 ||||||| ||||| || ||||||||||| || || ||||||||||| |||||| ||||| Sbjct 4578 CTAAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATAA 4519 Query 50402 AATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 50461 |||| ||| ||| | ||| | | |||||| | ||||| | | ||| |||| Sbjct 4518 AATGACGTTCATTGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCACTT 4459 Query 50462 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 50521 |||| || |||||||| ||||||||||| || |||||||| |||| || || ||||| | Sbjct 4458 CTTCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATACT 4399 Query 50522 GGATTGGGAAAATAACAAATC 50542 || ||||| || || |||| Sbjct 4398 CAATCGGGAACATTACGAATC 4378 Score = 141 bits (156), Expect = 1e-28 Identities = 233/335 (70%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 ||||||||| | || | ||| |||||| |||| || |||| ||||||| | |||| Sbjct 6056 CCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTACACAG 5997 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || ||| || ||||| || | || | ||| || |||||||||| || Sbjct 5996 TTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACA 5937 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGG---ATGCAATAAATGTTTA 49950 || || || | |||| | | | ||| ||| || ||| || | | ||||||| Sbjct 5936 GCTTCAGTAACAATA---CGAGTGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTA 5880 Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 || | ||||| |||||||| || || || ||||| || | || ||||| || Sbjct 5879 AAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACTG 5820 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | ||| ||||| || ||||| || || ||||||||||| || || ||||| || Sbjct 5819 AAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCG 5760 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAAC 50105 |||||| || || || |||| ||||| ||||| Sbjct 5759 CTAAAGAATATACCCTCAACTGATGCAAACGCAAC 5725 Score = 86.0 bits (94), Expect = 9e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 50226 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 50285 || ||| || || ||||| |||||||||||||||||||| || || ||||| || || || Sbjct 5241 AATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTG 5182 Query 50286 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGC 50342 ||| ||||| || |||| || || |||| || ||||| | |||||||| || Sbjct 5181 AAACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCACGAACGAATCGTTCCGC 5125 Score = 86.0 bits (94), Expect = 9e-12 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 49612 CTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATT 49668 ||| ||||||| |||| | | ||| | || ||||||| | ||||| || || | Sbjct 6527 CTTCAAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATTGGACATTACACCACTC 6468 Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| ||||| || || | || || || ||||| ||||| || |||||||| || | | Sbjct 6467 TTTTGATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCCCTCCAATGAAATCTGT 6408 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAA 49761 ||||||||||| || ||||| | ||||||| Sbjct 6407 TCCATGAAATCGAAAGGATTCGACGAATTATAA 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717007798316360