Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq21474 161 1e-34 >seq21474 Length=6928 Score = 161 bits (178), Expect = 1e-34 Identities = 249/355 (70%), Gaps = 8/355 (2%) Strand=Plus/Minus Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741 ||| || | ||| | ||||| | |||||| | | | ||||| ||| ||| | | Sbjct 6060 ACAGCCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTAC 6001 Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801 ||| |||||||| || ||| || |||| | || ||| ||||| || | ||| || | Sbjct 6000 ACAGTTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGT 5941 Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAG----AT 13857 |||||| || | | |||| || || | || || | | | | ||| || Sbjct 5940 CACAGCTTCAGTAACAATACGAGTGAT----TTGTTCGACCGTTGGTTTATTAACGATAT 5885 Query 13858 GTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGT 13917 ||||||| | ||||||||| |||||||||||||| |||||||| | || ||||| | Sbjct 5884 GTTTAAAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCAT 5825 Query 13918 TTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG 13977 | || || ||||| ||||| | ||| ||||| |||| ||||||||||| || |||| Sbjct 5824 TACTGAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATG 5765 Query 13978 ACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 | ||| ||||||||| |||||||||| |||||||| | ||| ||||| |||| Sbjct 5764 AACCGCTAAAGAATATACCCTCAACTGATGCAAACGCAACTAAACGTTCGGCAAA 5710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478885783526600