Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq21474 149 6e-31 >seq21474 Length=6928 Score = 149 bits (164), Expect = 6e-31 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||||||||| | ||||||||| |||||||||||||| |||||||| | || ||||| Sbjct 5886 ATGTTTAAAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTC 5827 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || || || ||||| ||||| | ||| ||||| |||| ||||||||||| ||||| Sbjct 5826 ATTACTGAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAA 5767 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820 ||| ||| ||||||||| |||||||||| |||||||| | || ||||| |||| Sbjct 5766 TGAACCGCTAAAGAATATACCCTCAACTGATGCAAACGCAACTAAACGTTCGGCAAA 5710 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 13296 AATATTTAATAAAA-ACT--AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTT 13352 ||| |||||| | | ||| |||| || |||| || ||| || || ||||| || Sbjct 6543 AATCTTTAATCACACACTTCAAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATT 6484 Query 13353 AGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACC 13412 || || || || | ||||||||||| | ||||| || ||||| || || ||||| || Sbjct 6483 GGACATTACACCACTCTTTTGATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCC 6424 Query 13413 TTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATA-AACACTTTA 13467 |||| ||| || | |||||| |||||||| ||||| | || || || |||||| Sbjct 6423 CTCCAATGAAATCTGTTCCATGAAATCGAAAGGATTCGACGAATTATAATACTTTA 6368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477748583520360