Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq21107 122 7e-23 seq17817 116 3e-21 seq32426 105 5e-18 seq68991 98.7 8e-16 >seq21107 Length=15695 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | ||| || || |||| ||| ||||||||| | ||| ||||||||| Sbjct 13941 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGAC 13882 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||||| | || || | |||||| ||||| |||||||||||||| ||||||| || Sbjct 13881 AGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGA 13822 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || || | || || | ||| || |||| | ||| || Sbjct 13821 ATACCCTCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACT 13762 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| ||||| || || || |||||||| Sbjct 13761 TCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | ||| || || |||| ||| ||||||||| | ||| ||||||||| Sbjct 14786 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGAC 14727 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||||| | || || | |||||| ||||| |||||||||||||| ||||||| || Sbjct 14726 AGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGA 14667 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || || | || || | | | || |||| | || || Sbjct 14666 ATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACT 14607 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || ||||| ||||| |||||||| Sbjct 14606 TCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| ||| ||| || || | ||| |||||||| | || ||| |||| ||| Sbjct 13695 ACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCC 13636 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || || || | || ||||||||| | || | |||||||| || ||| Sbjct 13635 AATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTC-CTG 13577 Query 43021 -ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| | | || || | | | || || | || || || | || || ||||| Sbjct 13576 TATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTT 13517 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 ||||||| ||||||||||| ||||||||||| Sbjct 13516 ACCGGTTAATGTTTTCACAAAGATTTGCATTTT 13484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || |||| | |||||||||| ||| ||| || || | |||||||||| Sbjct 14397 CCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14338 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| ||||||||||| || ||||||||||| ||||| ||||||| || Sbjct 14337 AGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGA 14278 Query 43003 ACACCTTCTTTTTC 43016 | || ||||| || Sbjct 14277 ATTCCCTCTTTGTC 14264 >seq17817 Length=30685 Score = 116 bits (128), Expect = 3e-21 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | ||| |||||||| | || ||| |||| ||||||||||| || |||||||| Sbjct 811 TTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAATG 752 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCC 43040 | || ||||||||| | || | |||||||| || ||| ||| | |||| || | | Sbjct 751 AGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTC-CTGTATCTTCGCTTTTACATTCTC 693 Query 43041 AACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAA 43100 | || || | | ||||| |||| || || || ||||| |||| ||||||||||| Sbjct 692 TATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAAA 633 Query 43101 AATTTGCATTTTCTTAATTTTATTT 43125 |||||||||| ||||| ||| || Sbjct 632 GATTTGCATTT--TTAATATTAATT 610 >seq32426 Length=2656 Score = 105 bits (116), Expect = 5e-18 Identities = 168/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | |||||| || |||| ||| ||||||||| | ||| |||| |||| Sbjct 434 CCCCCGCGGAGACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGAC 493 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||||| | || || | |||||| |||| || ||||||||||| ||||||| || Sbjct 494 AGTGTACGTCCATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGA 553 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| ||||| || ||| || | || || | | | || |||| | ||| || Sbjct 554 ATACCCTCTTTGTC-CTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAAC 612 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC-TTAA 43117 || | || |||| ||| ||||| || ||||| | || ||| ||||| || |||| Sbjct 613 TTCCAATGTAATAGCTTTACCGGTGAGTGTTTTGAAAAGGATTGGCATTATCATTAA 669 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| ||||| | || || | || | ||| |||||||| | |||||| || || Sbjct 207 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAG 266 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| ||||||||||| |||||||| |||| ||||||||||| | || Sbjct 267 AGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 326 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || || ||||||| | ||| ||||| | || || Sbjct 327 ATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCACT 386 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| ||| | || |||||||| || |||||||| Sbjct 387 TCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 >seq68991 Length=328 Score = 98.7 bits (108), Expect = 8e-16 Identities = 123/166 (74%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 42945 TGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCAC 43004 ||||||| | || ||||||||||| |||||||| |||| ||||||||||| | || | Sbjct 7 TGTACGTCCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAAT 66 Query 43005 ACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGT 43063 |||||||| || ||| || | ||||||| | | | || ||| | ||||| | Sbjct 67 CCCTTCTTTGTC-CTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTT 125 Query 43064 CTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | | || || ||||| ||||| ||||||||||| || |||||||| Sbjct 126 CCAATGTAATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || | |||||||||||| | || ||||||||| | || ||||| Sbjct 173 CCCCCGCGGAGACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTG 232 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||||| | || ||||||||||| |||||||| |||| ||||||||||| | || Sbjct 233 AGTGTACGTCCATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGA 292 Query 43003 ACACCTTCTTTTTC 43016 | ||| ||||| || Sbjct 293 ATACCCTCTTTATC 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380716801194042