Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8365 612 3e-170 seq21474 123 3e-23 >seq8365 Length=5311 Score = 612 bits (678), Expect = 3e-170 Identities = 1511/2269 (67%), Gaps = 58/2269 (3%) Strand=Plus/Plus Query 70822 GCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAA 70881 |||| ||||||||| | ||||||||| || || |||| || | |||| |||| ||| Sbjct 639 GCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAACCCCAATTTCCAGCCGTGAAAG 698 Query 70882 TGCATACTCGTTAG-TTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACT 70940 ||||| || | |||| || | | || | || || ||||| || | ||| || || Sbjct 699 TGCATCGATGTGATCTTTGCCATTG-TGGGTGCTGCGATATGAATGTTAAGCGATTGGCT 757 Query 70941 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 71000 ||| || ||||| || || | || |||| ||||| || | || |||| ||||| Sbjct 758 TTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAATAACTGTACGCTGTGATATTTC 817 Query 71001 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGA 71057 ||| | ||||| || | | ||| | ||| | |||| | || ||||| || Sbjct 818 CCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAATTCCCTCAATCAATTGAATCGA 877 Query 71058 TCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 71117 ||| || | ||| || ||| || | | |||||||| | || | || || || Sbjct 878 TCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATTCCAAAGTTCACGTTCAGTCAA 937 Query 71118 AACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTA 71177 | |||| | |||||| ||||||| | |||||||||||| ||||| ||||| || | || Sbjct 938 ATCTCTCAAAAGATGATGATTAACGATTTGAAATTCTCCGGACAAAACTCTTCGTGAATA 997 Query 71178 AATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 71237 |||||||| ||||||| ||| || ||||| |||||||||||||| || || || ||||| Sbjct 998 TATATTACTCGTATACGCTTCAACAGACTCGTTATTTCCCAAAATCTGTGCTGTCGATGC 1057 Query 71238 AGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTT 71297 |||||||| ||||| | ||| ||||| || || || || || | ||| || || || Sbjct 1058 CGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCCGTGCATTTTGATCTTTTCCTT 1117 Query 71298 TAGAGATTC---CCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNN 71354 || ||| ||||||||| || || | ||| Sbjct 1118 CAG---TTCAGTCCAATTCCATAGGTCTGTCGGTGTCTTATTCCACATGTCATACTGCAG 1174 Query 71355 NATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAG 71414 || || ||| ||| || || |||||| ||||| || || | | || || | Sbjct 1175 TATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTAAGGACCATACTGTTGTGCCAA 1234 Query 71415 TTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATC 71474 ||||||||||| || | || || |||| | || || || || | |||||||| Sbjct 1235 TTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTCAAATATTTGAATATTGAGACG 1294 Query 71475 TTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 71534 || ||||| || || ||||| || ||| | |||||| ||||| || |||||||| || Sbjct 1295 TTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAATGAACGCATCGGCTAATCCCTG 1354 Query 71535 AACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATA 71594 ||| ||||| || || || | || || ||||| || ||| | ||| |||| ||||| Sbjct 1355 AACTCCAATGCCAATCGGACGGTTCCTTTTATTGGAGCGTTCCGTTTCAGGAACGGGATA 1414 Query 71595 ATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAG 71654 |||||||||||| ||||| ||||| | |||| | || ||||| | |||||||| || Sbjct 1415 ATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAATGACTTTAGCGACATCCTTGAG 1474 Query 71655 -TTTGAGAAAATCAAATCTCCCATCTATT------ACAAACACGTTCAAGGCAACAGATG 71707 |||| ||| ||||| | | | | || ||| || | || || || | Sbjct 1475 CTTTGCGAAG-TCAAAGGTGCGGGTTTTGGTGTCGACGAACCGATTGAGTGCGACTGAAG 1533 Query 71708 CCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGAT 71767 ||| |||||| ||||| | || | | | | ||||| | ||||||||||| |||| Sbjct 1534 CCAAATTACACACGGCAATTTCGTCGGGAGATGAATATTCAACGATTTCAGTGCATAGAT 1593 Query 71768 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 71827 | || || |||||||| | |||||||||||| |||| ||| || || |||| Sbjct 1594 TTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGACTTTCGGTTGCAATGGTCTTTAT 1653 Query 71828 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC-GACT 71886 ||| || |||| || || || || ||||||| || | ||| || | ||| | |||| Sbjct 1654 AAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCGACAATGGCATACCACAATGACT 1713 Query 71887 CGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCG 71946 ||||| | | |||||| |||||||||||||||||| |||||| || Sbjct 1714 -GAGCCCGAACCTGACGTTTGTATTTCTTTTCTCTTTCGTATTTCTCATATAAATCCTCA 1772 Query 71947 AACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCAC 72006 ||| | | ||||| | | | ||| || || ||||| | ||||||||||||||||| Sbjct 1773 AACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTCGTGTGGACACATCAATGACCA- 1831 Query 72007 TCTCCATCATC--ATTTA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 72062 | ||| |||| ||| | | |||||||| || | ||| ||||||||||| || ||| || Sbjct 1832 TATCC--CATCGGATTCAACACGTTTCATGAACAAATCGGGAATCCAAAG-GCCATAGAA 1888 Query 72063 TAGATCTCTGGTTC-TATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | || | | | ||| ||||| || || ||||| |||| |||||||| | | Sbjct 1889 CAAGTCACGTGCACGTATT-TCCTCAGAACCCGTGTTCTTCCTAAGGTCGAGGAATTCGA 1947 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 | ||| | |||||||||||| | ||| | || | | | || || |||||||| || | Sbjct 1948 ATACATCGGCATGCCACGGTTCGATGTAAACTGCGAAAGCGCCGGGACGTTTGTTCCCCC 2007 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 ||||||| | ||||| || || || || | || | |||||| || | | ||||| | Sbjct 2008 CCTGATCGACGTATCGGGCAGTATTGTTGAACACGCGCAACATCGGGACCAATCCATTTG 2067 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAG 72299 || ||||| || || | ||||| | || | || | || | || ||| || Sbjct 2068 ATATGCCATTCGTACCCGCAATATAAGTGCCCTTAGCCCTTATGCAATGAACATTTATT- 2126 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 || || || || || ||| || || | |||||| |||| | || || || || || Sbjct 2127 -CCGATACCACCGGCAGCTTTCGATATGACAGCGCATTGTTTGAGTGTGTCGTAAATCCC 2185 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 ||| ||||| ||||| ||||| | | || ||||| || |||| ||| | | ||| Sbjct 2186 CTCAATACTGTCATCTTTCATGGTCAATAAGAAACAACTGGACAATTGTGGGTGCGGAGT 2245 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 ||| ||||| || | || || || || || ||||||||| ||| |||| ||||| || Sbjct 2246 TCCGGCATTGAACAGTGTCGGTGATGCATGAGTAAACCATCGTTCGGACATGAGATTATA 2305 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 ||||||||| || | || || || | ||||| || || ||||||||||| | ||| Sbjct 2306 CGTCTCAATGGCAGCGTCAATGTCATTTCCGTGTATCCCCACAGCGACACGCATGAGCAT 2365 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 ||||| |||| ||| ||| || |||| || || | || || || || | || Sbjct 2366 GTGCTGCGGTCGTTCCGCGACTTTCCTATTGATCTTAATTAAATATGACCGCTCAAGTGT 2425 Query 72600 TTTAAAACCAAAATAGTTGT-ATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 ||| ||||| ||||| |||| |||| || || || || ||||| || | ||||||||| Sbjct 2426 TTTGAAACCGAAATAATTGTAATGATAA-TCGCGATCATAAATGATGGCGGAATTGAGTC 2484 Query 72659 TATCCTTATATTTGTTAACTATATCCATGGTGATACT----TGAAATAATCGGAGAATGT 72714 || || || | || | ||| || | || |||||| ||||| ||| Sbjct 2485 GTTCGGCATTCTTTTCAATGA----CATCGTAAATCTCATCTGAAATCATCGG----TGT 2536 Query 72715 TT----CCCATT-TTTAGGATTAACATAGTTGA-ATAAATCCTCCATCACTTCACTAAAT 72768 || ||||| | | || |||| ||| | | |||| || || || ||| Sbjct 2537 TTTGAGACCATTACTCTCGTTTCTCATA--TGATAGAGATCCCTAATGACATCGGAAAAG 2594 Query 72769 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAA 72828 ||| |||||||| || |||| |||||| || || || | || || ||||| |||||| Sbjct 2595 TTTTTCTTTGTTTCTTTATGTAAATTTGACACTGCAATACGTGCCGCGAGAATAGCATAA 2654 Query 72829 TCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACC 72888 || | ||||| || || || || || ||||| || || | | | |||||||| || Sbjct 2655 TCGGCATGTTTCGTTGTCATTGTTGCGGCGATTTCCGCCGCTAAATTATCCAATTCAACG 2714 Query 72889 GTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATA 72948 || || || || |||||| || ||| ||||||| | ||| | ||| || Sbjct 2715 GTCGTGACACCCGAATATATCCCGGCGATGACCTTCAATGTGATTGACGGTGCATCGATG 2774 Query 72949 TGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATA 73008 | || ||| || ||||| || | ||| || || || |||||||| || |||||| Sbjct 2775 TAATTCATGTCCAAACCATAGCAGAGTTTCACGATTCGGGATGTGATTTTGTCGAACATA 2834 Query 73009 ACATTTTCCCGGCATCCATTTCGTTTAACGACAAACATTTTTGTCGGTG 73057 || ||| | ||| | || ||||| ||| ||||||||| ||||| Sbjct 2835 ACTGATTCTTTTCGTCCGTCTCTTTTAATTACATACATTTTTG-CGGTG 2882 >seq21474 Length=6928 Score = 123 bits (136), Expect = 3e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 42447 CTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 42506 ||||||| || || || ||||||||||| || || ||||||||||| |||||| ||||| Sbjct 4578 CTAAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATAA 4519 Query 42507 AATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTT 42566 ||| ||| | | | | | | |||||| | ||||| | | ||| |||| Sbjct 4518 AATGACGTTCATTGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCACTT 4459 Query 42567 CTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATT 42626 |||| || |||||||| ||||| ||||| || |||||||| |||| ||||| ||||| | Sbjct 4458 CTTCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATACT 4399 Query 42627 GAATTGGGAAAATAACAAATC 42647 ||| ||||| || || |||| Sbjct 4398 CAATCGGGAACATTACGAATC 4378 Score = 123 bits (136), Expect = 3e-23 Identities = 226/331 (68%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 ||||||||| | || | ||| |||| |||| || |||| ||||||| | |||| Sbjct 6056 CCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTACACAG 5997 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || || ||| || ||||| || | || | ||| || |||||||| | || Sbjct 5996 TTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACA 5937 Query 41999 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 42058 || || || | |||| | | | ||| | | ||| || | | ||||||||| Sbjct 5936 GCTTCAGTAACAATACGAGTGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTAAAG 5877 Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 | ||||| |||||||| || || || |||||||| | || | ||| || || Sbjct 5876 AGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACTGAAG 5817 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA 42178 || | ||| ||||| || ||||| || || ||||||||||| || || ||||| || | Sbjct 5816 GTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTA 5757 Query 42179 AAGAAGATTCCTTCTACTGCCGCAAAGGCAA 42209 ||||| || || || |||| ||||| |||| Sbjct 5756 AAGAATATACCCTCAACTGATGCAAACGCAA 5726 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 42331 AACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTG 42390 || ||| || || ||||| |||||||||||||| ||||| || || ||||| || || || Sbjct 5241 AATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTG 5182 Query 42391 AAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGC 42447 ||| ||||| || |||| || || ||||| || ||||| | |||||||| || Sbjct 5181 AAACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCACGAACGAATCGTTCCGC 5125 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 41717 CTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATT 41773 ||| ||||||| |||| ||| ||| | || ||||||| | ||||| || || | Sbjct 6527 CTTCAAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATTGGACATTACACCACTC 6468 Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||| ||||| || || | || || || ||||| || || || |||||||| || | | Sbjct 6467 TTTTGATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCCCTCCAATGAAATCTGT 6408 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAA 41866 ||||||||||| || ||||| | ||||||| Sbjct 6407 TCCATGAAATCGAAAGGATTCGACGAATTATAA 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669960939631240