Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq32426 116 4e-21 seq21107 107 2e-18 seq68991 95.1 1e-14 seq8365 87.8 2e-12 >seq32426 Length=2656 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | |||| || ||||| ||||| || ||||| || Sbjct 207 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAG 266 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || | |||||| || ||| |||||||||| || ||||| ||||| Sbjct 267 AGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 326 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || |||||| ||| | | || | ||||| | |||||| ||| Sbjct 327 ATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCACT 386 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || |||||| | | |||||| |||||||||||||| Sbjct 387 TCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 >seq21107 Length=15695 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| || ||||| || | || || || ||||| || || |||||| | Sbjct 14786 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGAC 14727 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | |||||||||||||| || || | |||| || ||||||||||| || Sbjct 14726 AGTGTACGTCCA-TCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGG 14668 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| |||||| |||| | ||| | || || | ||||| || Sbjct 14667 AATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAAC 14608 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || || ||||| | |||||| || || |||||||| Sbjct 14607 TTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||| | || || ||||| || || || |||||| | || | |||||| Sbjct 13696 AACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTC 13637 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | |||||| || || |||| || | || ||||| || || || ||||||||||| Sbjct 13636 CAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTG 13577 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || |||| | ||| | ||| |||| ||||| ||||| | ||| | ||| || Sbjct 13576 TATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTT 13517 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| |||||||| || || |||||||| Sbjct 13516 ACCGGTTAATGTTTTCACAAAGATTTGCAT 13487 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || ||||| | || || ||||| || || ||||||||||| | || | | Sbjct 14385 CGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCG 14326 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || | |||||| || ||| | |||| || ||||||||||| || || || |||||| Sbjct 14325 TCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTG 14266 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | ||| | || || | ||||| || || | || | Sbjct 14265 TCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGATG 14206 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||||| ||||| | ||| || ||||| ||||||||| || Sbjct 14205 GTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCATACCT 14167 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| || ||||| || | || || || ||||| || || |||||| | Sbjct 13941 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGAC 13882 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | |||||||||||||| || || | |||| || ||||||||||| || Sbjct 13881 AGTGTACGTCCA-TCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGG 13823 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || ||||| || |||||| || | | || | || || | || || || Sbjct 13822 AATACCCTCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAAC 13763 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || |||||||| | || || ||||| |||||||| Sbjct 13762 TTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 >seq68991 Length=328 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | |||||| || ||| |||||||||| || ||||| || || || ||||||||| Sbjct 17 TCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTTG 76 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||| ||| | | ||| | || || | |||||| ||||| | || | Sbjct 77 TCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAATG 136 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || ||||| | ||||| |||||||||||||| Sbjct 137 GTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 >seq8365 Length=5311 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 157048 ATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTAC 157107 ||||| || | || || | |||||| |||||| |||||||||| | |||||| || Sbjct 1517 ATTGAGTGCGACTGAAGCCAAATTACACACGGCAATTTCGTCGGGAGATGAATATTCAAC 1576 Query 157108 TATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCG 157167 ||||| | || | ||| |||||| || |||| ||| ||||||| || || Sbjct 1577 GATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGACTTTCG 1636 Query 157168 GTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCG 157210 ||||||| ||| || || | ||||||||||||||| || ||| Sbjct 1637 GTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCG 1679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506124279181680