Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq44721 129 9e-25 seq8365 87.8 3e-12 >seq44721 Length=17803 Score = 129 bits (142), Expect = 9e-25 Identities = 325/485 (67%), Gaps = 18/485 (4%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 || || || || ||||| || || || || || | |||||||| || || || || || Sbjct 6039 TTACGATAGAATATGACACCCGCGCGCGGTCCGCGAAGAGTCTTATGAGTGGTCGTAGTG 5980 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGC-AAT 127220 || ||||||||||| ||||| ||| || | ||| |||||| | || || | | Sbjct 5979 ACGATGTCACAATATTCAAATGGGTTCGGTGCTAATTTAGCCGCAA-CGAGACCACTGAC 5921 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280 ||||| || || ||||| | | | ||| | ||| | |||||||| ||| | | Sbjct 5920 ATGTGCCATGTCTGCCATTAAATAAGCACCGTTTTCATTAGTAATCTCTCTGAACCTCTT 5861 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340 |||||| | | || ||||| || ||| | || || || || | | || || |||| Sbjct 5860 ATAGTCGAGATGACGCGGATAACAGCTGATCCCTGCGATTATCATTTTCGGCTTAAATA- 5802 Query 127341 ATTG-GCA-CTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 || | ||| ||| || |||| |||| || | ||||| ||| ||||| ||| ||| Sbjct 5801 ATCGCGCATTTCTTTGC-AGTTCATCATAATCAATAAGTCCTGTCGCAGGATTCACTTTG 5743 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--------CGTTGCG-GA---AT 127446 |||||||| ||||||||| | ||| || || || | || || || || Sbjct 5742 TACGGCATCGATTCGAAAAATATTGAAGTCGCAGAAATTTTCTTTTTTTCCGTGAAATAT 5683 Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 || || || | ||| || || ||||| || || || |||||||| || ||||| || Sbjct 5682 CCATGAGTTAAGTGTCCACCATCGGGAAGGTCAAGACCCATGATCCTTCCGTGAGGACCG 5623 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 || | ||| || ||||| ||||| || || || |||||||| ||||| ||| || Sbjct 5622 ACCAGTCCTGTATACACCGCAAAATTTGCAGGAGAACCCGAGTATGGTTGGACATTAACA 5563 Query 127567 CCCCA 127571 ||||| Sbjct 5562 CCCCA 5558 >seq8365 Length=5311 Score = 87.8 bits (96), Expect = 3e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 |||||||| ||||| || || ||||| || |||||| | || || ||| | ||||| Sbjct 2023 CGATACGTCGATCAGGGGGGGAACAAACGTCCCGGCGCTTTCGCAGTTTACATCGAACCG 1964 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 ||||| || || || || || || |||| | | || ||| | || | ||| || | Sbjct 1963 TGGCATGCCGATGTATTCGAATTCCTCGACCTTAGGAAGAACACGGGTTCTGAGGAAATA 1904 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT 97039 || || | |||||||| |||| || ||| | || |||||||||||||| || || Sbjct 1903 CGTGCACGTGACTTGTTCTATGGCCTTTGGATTCCCGATTTGTTCATGAAACGTGT 1848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739758187205240